Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 3.0e-178 628.2 290 100.0
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 1.0e-149 533.5 289 84.1
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 3.9e-141 505.0 289 79.2
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 6.8e-138 494.2 291 79.4
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 8.7e-125 450.7 289 73.0
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 6.9e-122 441.0 287 71.8
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 6.4e-120 434.5 282 70.9
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 3.2e-119 432.2 285 70.5
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 7.1e-119 431.0 289 69.9
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 7.1e-119 431.0 289 69.9
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 1.6e-118 429.9 289 68.5
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 1.6e-118 429.9 289 68.5
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 1.9e-116 422.9 282 68.8
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 1.3e-115 420.2 279 69.9
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 2.1e-115 419.5 285 69.5
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 3.7e-115 418.7 283 68.6
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 6.2e-115 417.9 295 66.4
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 1.4e-114 416.8 285 69.5
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 1.4e-114 416.8 281 68.3
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 2.4e-114 416.0 288 65.6
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 6.9e-114 414.5 282 68.8
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.2e-113 413.7 282 68.4
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 1.5e-113 413.3 282 67.4
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 2.6e-113 412.5 280 67.9
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 2.6e-113 412.5 280 68.2
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 3.4e-113 412.1 282 67.4
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 4.5e-113 411.8 278 68.7
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 4.5e-113 411.8 280 68.6
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.0e-112 410.6 282 67.0
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 1.3e-112 410.2 287 67.6
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 2.2e-112 409.5 279 69.5
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 2.2e-112 409.5 280 65.7
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 2.9e-112 409.1 281 67.6
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 2.9e-112 409.1 278 64.7
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 4.9e-112 408.3 287 66.9
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 4.9e-112 408.3 280 68.6
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 4.9e-112 408.3 289 67.5
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 1.1e-111 407.1 282 66.3
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 1.1e-111 407.1 283 66.4
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 1.9e-111 406.4 275 66.2
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 1.9e-111 406.4 279 68.5
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 2.5e-111 406.0 280 66.1
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 2.5e-111 406.0 285 64.9
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 7.1e-111 404.4 280 65.4
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 1.2e-110 403.7 281 66.5
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 1.2e-110 403.7 280 65.4
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 1.2e-110 403.7 280 66.1
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 1.6e-110 403.3 280 68.6
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 4.6e-110 401.7 286 66.1
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 6.0e-110 401.4 280 67.9
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 1.0e-109 400.6 286 65.0
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 1.3e-109 400.2 280 67.9
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 3.0e-109 399.1 282 66.0
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 1.5e-108 396.7 279 67.4
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 1.5e-108 396.7 279 67.4
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 2.5e-108 396.0 278 64.4
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 4.3e-108 395.2 289 65.4
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 5.7e-108 394.8 342 56.1
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 9.6e-108 394.0 279 67.0
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 8.2e-107 391.0 289 63.0
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 1.1e-106 390.6 280 64.3
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 1.4e-106 390.2 346 55.5
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 2.0e-105 386.3 280 65.0
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 5.9e-105 384.8 280 63.9
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 1.0e-104 384.0 284 65.5
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 1.3e-104 383.6 282 62.4
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 5.0e-104 381.7 282 64.5
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 5.0e-104 381.7 281 64.4
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 8.5e-104 380.9 280 62.1
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 8.5e-104 380.9 280 63.6
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 1.1e-103 380.6 278 62.6
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 9.3e-103 377.5 283 63.3
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 1.6e-102 376.7 282 62.1
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 6.1e-102 374.8 280 62.1
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 1.0e-101 374.0 281 61.2
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 2.3e-101 372.9 288 61.1
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 3.0e-101 372.5 279 63.4
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 6.7e-101 371.3 282 62.1
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 8.7e-101 370.9 285 61.8
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 1.6e-99 366.7 319 54.2
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 2.2e-99 366.3 280 62.1
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 8.2e-99 364.4 285 60.0
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 1.4e-98 363.6 280 62.1
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 5.5e-95 351.7 287 57.1
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 7.9e-94 347.8 282 57.8
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 5.1e-93 345.1 273 59.7
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 2.0e-92 343.2 249 64.7
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.3e-91 340.5 234 67.1
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 2.8e-91 339.3 289 55.7
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 3.2e-87 325.9 288 53.5
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 2.0e-84 316.6 294 54.1
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 2.6e-81 306.2 302 50.3
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 8.5e-80 301.2 302 53.0
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 1.1e-66 257.7 185 67.6
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 1.2e-62 244.2 278 47.8
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 3.4e-60 236.1 146 71.9
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 2.1e-54 216.9 274 45.6
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 1.1e-39 167.9 115 65.2
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 2.8e-38 163.3 298 36.2
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 6.2e-30 135.6 239 35.1
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 1.8e-29 134.0 247 32.8
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 9.2e-26 121.7 254 34.6
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 4.6e-25 119.4 74 68.9
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 1.8e-21 107.5 74 59.5
Nitab4.5_0000480g0030 Nicotiana tabacum HOM05D007132 ORTHO05D009120 3.2e-18 96.7 81 56.8
CDE11G0272 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 1.7e-16 90.9 102 45.1
Migut.E01364 Erythranthe guttata HOM05D007132 ORTHO05D009120 3.9e-16 89.7 59 61.0
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 6.9e-13 79.0 189 33.3
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 7.6e-12 75.5 275 26.9
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 9.3e-10 68.6 248 25.8
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 2.1e-09 67.4 91 42.9
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 6.7e-08 62.4 203 28.1
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 6.7e-08 62.4 203 28.1
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 6.7e-08 62.4 203 28.1
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 8.7e-08 62.0 181 27.1
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 2.5e-07 60.5 186 27.4
Cre16.g694201 Chlamydomonas reinhardtii HOM05D009332 ORTHO05D044261 2.5e-07 60.5 191 28.8
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 2.5e-07 60.5 180 28.3
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 4.3e-07 59.7 186 25.8
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 4.3e-07 59.7 186 27.4
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 5.6e-07 59.3 220 25.0
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 7.4e-07 58.9 234 26.5
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 9.6e-07 58.5 186 26.3
MELO3C015209.2 Cucumis melo HOM05D004419 ORTHO05D005480 1.3e-06 58.2 186 26.3
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 2.1e-06 57.4 186 26.3
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 2.1e-06 57.4 176 26.7
Rhsim11G0036300 Rhododendron simsii HOM05D000007 ORTHO05D000039 2.1e-06 57.4 32 71.9
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 2.1e-06 57.4 187 27.3
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 3.7e-06 56.6 186 25.8
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 3.7e-06 56.6 196 26.5
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 3.7e-06 56.6 176 23.9
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 3.7e-06 56.6 186 26.3
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 4.8e-06 56.2 209 27.3


User provided reference genes

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