Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund10892 Selenicereus undatus HOM05D000475 ORTHO05D000343 1.3e-149 533.1 277 100.0
AUR62030756 Chenopodium quinoa HOM05D000475 ORTHO05D000343 4.5e-38 162.5 279 43.7
EL10Ac5g12479 Beta vulgaris HOM05D000475 ORTHO05D000343 2.5e-36 156.8 277 40.4
GSVIVG01030266001 Vitis vinifera HOM05D000475 ORTHO05D000343 3.7e-32 142.9 278 38.5
Ah.12g059110 Amaranthus hybridus HOM05D000475 ORTHO05D000343 4.8e-32 142.5 277 37.2
Dinv35407 Davidia involucrata HOM05D000475 ORTHO05D000343 1.8e-31 140.6 280 38.6
Sc01g0005730 Simmondsia chinensis HOM05D000475 ORTHO05D000343 4.1e-31 139.4 311 36.0
AUR62036403 Chenopodium quinoa HOM05D000475 ORTHO05D000343 1.2e-27 127.9 280 39.3
Rhsim09G0080000 Rhododendron simsii HOM05D000475 ORTHO05D000343 2.0e-25 120.6 287 36.6
Manes.09G112000 Manihot esculenta HOM05D000475 ORTHO05D000343 3.4e-25 119.8 281 35.2
Duzib128G1179 Durio zibethinus HOM05D000475 ORTHO05D000343 5.7e-25 119.0 186 41.9
Actinidia11548 Actinidia chinensis HOM05D000475 ORTHO05D000343 7.5e-25 118.6 284 37.7
Hma1.2p1_0501F.1_g167350 Hydrangea macrophylla HOM05D000475 ORTHO05D000343 4.8e-24 115.9 282 35.8
Dinv12172 Davidia involucrata HOM05D000475 ORTHO05D014148 1.1e-23 114.8 127 52.0
Gohir.A09G168100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 7.0e-23 112.1 305 32.8
TAR633G1711 Trochodendron aralioides HOM05D000475 ORTHO05D000343 9.1e-23 111.7 285 35.4
CiPaw.10G160700 Carya illinoinensis HOM05D000475 ORTHO05D000343 3.5e-22 109.8 310 33.5
Haze_21089 Corylus avellana HOM05D000475 ORTHO05D000343 1.0e-21 108.2 193 40.9
Sabra16G0130800 Salix brachista HOM05D000475 ORTHO05D000343 1.3e-21 107.8 285 33.0
Gohir.D09G164100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 2.2e-21 107.1 305 31.5
Gorai.006G185700 Gossypium raimondii HOM05D000475 ORTHO05D000343 5.0e-21 105.9 192 38.5
Lj2A66G60 Lonicera japonica HOM05D000475 ORTHO05D000343 1.1e-20 104.8 293 29.4
Potri.016G127600 Populus trichocarpa HOM05D000475 ORTHO05D000343 1.1e-20 104.8 283 33.6
TWI77G0406 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 1.1e-20 104.8 284 31.3
arahy.Tifrunner.gnm1.ann1.RFF9M1 Arachis hypogaea HOM05D000475 ORTHO05D000343 1.9e-20 104.0 107 51.4
Glyma.18G207500 Glycine max HOM05D000475 ORTHO05D000343 1.9e-20 104.0 282 34.8
Cpa.g.sc5.240 Carica papaya HOM05D000475 ORTHO05D000343 3.2e-20 103.2 210 35.7
Phvul.008G092000 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 2.1e-19 100.5 282 31.6
CiPaw.09G215600 Carya illinoinensis HOM05D000475 ORTHO05D000343 8.0e-19 98.6 308 30.8
arahy.Tifrunner.gnm1.ann1.E8CB8M Arachis hypogaea HOM05D000475 ORTHO05D000343 3.0e-18 96.7 287 32.1
Nitab4.5_0001226g0100 Nicotiana tabacum HOM05D000475 ORTHO05D000343 4.0e-18 96.3 131 44.3
Aqoxy1G01279 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 1.2e-17 94.7 201 34.8
arahy.Tifrunner.gnm1.ann1.VSZX8Y Arachis hypogaea HOM05D000475 ORTHO05D000343 1.2e-17 94.7 283 30.7
Duzib093G0789 Durio zibethinus HOM05D000475 ORTHO05D000343 2.0e-17 94.0 294 29.6
Cc06_g00720 Coffea canephora HOM05D000475 ORTHO05D000343 4.4e-17 92.8 280 30.4
Lalb_Chr03g0043501 Lupinus albus HOM05D000475 ORTHO05D000343 4.4e-17 92.8 286 33.2
Aqoxy3G02092 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 5.7e-17 92.4 277 31.4
COL.COLO4_14448 Corchorus olitorius HOM05D000475 ORTHO05D000343 5.7e-17 92.4 191 34.6
PGR031G2393 Punica granatum HOM05D000475 ORTHO05D000343 5.7e-17 92.4 198 37.9
arahy.Tifrunner.gnm1.ann1.LAF8WM Arachis hypogaea HOM05D000475 ORTHO05D000343 9.8e-17 91.7 283 30.7
PGSC0003DMG400011862 Solanum tuberosum HOM05D000475 ORTHO05D000343 9.8e-17 91.7 107 43.9
Lj1g0000774 Lotus japonicus HOM05D000475 ORTHO05D000343 2.8e-16 90.1 108 45.4
PGSC0003DMG400011861 Solanum tuberosum HOM05D000475 ORTHO05D000343 2.8e-16 90.1 107 43.9
CSS0035168 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 6.3e-16 89.0 178 36.0
DCAR_018667 Daucus carota HOM05D000475 ORTHO05D000343 6.3e-16 89.0 195 34.9
Migut.L02045 Erythranthe guttata HOM05D000475 ORTHO05D000343 8.3e-16 88.6 283 30.0
Lalb_Chr01g0023371 Lupinus albus HOM05D000475 ORTHO05D000343 8.3e-16 88.6 285 29.1
Rhsim03G0148200 Rhododendron simsii HOM05D000475 ORTHO05D000343 8.3e-16 88.6 140 43.6
Peaxi162Scf00264g00858 Petunia axillaris HOM05D000001 ORTHO05D000003 1.1e-15 88.2 286 32.2
ClCG10G022460 Citrullus lanatus HOM05D000475 ORTHO05D000343 1.4e-15 87.8 284 31.3
Dinv21798 Davidia involucrata HOM05D000475 ORTHO05D000343 1.8e-15 87.4 248 32.3
Lj2g0010150 Lotus japonicus HOM05D000475 ORTHO05D000343 1.8e-15 87.4 165 38.2
Nitab4.5_0000047g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.8e-15 87.4 283 33.2
QL07p033892 Quercus lobata HOM05D000475 ORTHO05D000343 1.8e-15 87.4 373 30.3
Peaxi162Scf00744g00336 Petunia axillaris HOM05D000475 ORTHO05D000343 2.4e-15 87.0 236 32.2
Cc02_g05890 Coffea canephora HOM05D000475 ORTHO05D000343 3.1e-15 86.7 126 38.9
Nitab4.5_0000355g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 9.2e-15 85.1 278 28.8
Rhsim03G0148100 Rhododendron simsii HOM05D000475 ORTHO05D014148 9.2e-15 85.1 120 43.3
Ciclev10011220m.g Citrus clementina HOM05D000475 ORTHO05D000343 1.2e-14 84.7 236 34.3
Sopen10g027980 Solanum pennellii HOM05D001655 ORTHO05D000343 1.2e-14 84.7 179 32.4
Solyc10g076330.3 Solanum lycopersicum HOM05D000475 ORTHO05D000343 3.5e-14 83.2 107 42.1
CAN.G1225.6 Capsicum annuum HOM05D000475 ORTHO05D000343 4.5e-14 82.8 104 41.3
Sed0026269 Sechium edule HOM05D000475 ORTHO05D000343 5.9e-14 82.4 286 31.1
Sed0000701 Sechium edule HOM05D000475 ORTHO05D000343 1.0e-13 81.6 287 28.9
Nitab4.5_0001703g0060 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.7e-13 80.9 280 29.6
vmacro06936 Vaccinium macrocarpon HOM05D000475 ORTHO05D000343 2.3e-13 80.5 126 43.7
CANSAT35G0609 Cannabis sativa HOM05D000475 ORTHO05D000343 2.9e-13 80.1 247 30.0
HanXRQChr01g0007041 Helianthus annuus HOM05D000475 ORTHO05D000343 3.8e-13 79.7 124 42.7
Nitab4.5_0003850g0020 Nicotiana tabacum HOM05D000475 ORTHO05D000343 3.8e-13 79.7 278 28.1
Aqoxy3G02296 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 5.0e-13 79.3 136 38.2
Actinidia33894 Actinidia chinensis HOM05D000475 ORTHO05D000343 6.6e-13 79.0 269 30.9
MBI15_g28858_MAGBIO Magnolia biondii HOM05D000475 ORTHO05D000343 6.6e-13 79.0 126 41.3
Potri.008G074200 Populus trichocarpa HOM05D000475 ORTHO05D000343 8.6e-13 78.6 171 32.2
CAN.G629.5 Capsicum annuum HOM05D000475 ORTHO05D000343 1.1e-12 78.2 283 30.4
Thecc.05G006500 Theobroma cacao HOM05D000475 ORTHO05D000343 1.1e-12 78.2 309 29.1
SGA_v2.0_scaffold240G44069 Striga asiatica HOM05D000475 ORTHO05D000343 1.5e-12 77.8 291 29.6
Psat3g124320 Pisum sativum HOM05D000475 ORTHO05D000343 1.9e-12 77.4 108 39.8
Thecc.09G230200 Theobroma cacao HOM05D000475 ORTHO05D000343 1.9e-12 77.4 140 40.0
CsaV3_3G033400 Cucumis sativus L. HOM05D000475 ORTHO05D000343 2.5e-12 77.0 284 27.8
Nitab4.5_0004057g0020 Nicotiana tabacum HOM05D000475 ORTHO05D000343 2.5e-12 77.0 288 28.5
VMungo0331G1460 Vigna mungo HOM05D000475 ORTHO05D000343 2.5e-12 77.0 108 41.7
TWI38G2109 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 5.6e-12 75.9 160 36.9
Haze_17294 Corylus avellana HOM05D000475 ORTHO05D000343 9.5e-12 75.1 111 43.2
Eucgr.A00623 Eucalyptus grandis HOM05D000475 ORTHO05D000343 1.2e-11 74.7 283 27.9
Prupe.6G285100 Prunus persica HOM05D000475 ORTHO05D000343 1.6e-11 74.3 319 27.9
HanXRQChr14g0458941 Helianthus annuus HOM05D000475 ORTHO05D000343 2.8e-11 73.6 107 42.1
Aqoxy1G01277 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 4.7e-11 72.8 123 40.7
TPR.G35832 Trifolium pratense HOM05D000475 ORTHO05D000343 6.1e-11 72.4 156 35.9
Nn2g14564 Nelumbo nucifera HOM05D000475 ORTHO05D000343 8.0e-11 72.0 287 28.6
QL08p064006 Quercus lobata HOM05D000475 ORTHO05D000343 8.0e-11 72.0 129 38.8
VMungo1383G1412 Vigna mungo HOM05D000475 ORTHO05D000343 8.0e-11 72.0 89 41.6
SGA_v2.0_scaffold85G26679 Striga asiatica HOM05D000475 ORTHO05D000343 1.4e-10 71.2 295 29.8
AL6G10390 Arabidopsis lyrata HOM05D000475 ORTHO05D000343 1.8e-10 70.9 165 32.1
GSVIVG01032736001 Vitis vinifera HOM05D000475 ORTHO05D000343 1.8e-10 70.9 137 35.8
Cfa001257 Carpinus fangiana HOM05D000475 ORTHO05D000343 4.0e-10 69.7 130 38.5
QL05p049129 Quercus lobata HOM05D000475 ORTHO05D000343 4.0e-10 69.7 388 28.6
AT5G01660 Arabidopsis thaliana HOM05D000475 ORTHO05D000343 5.2e-10 69.3 169 32.5
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 5.2e-10 69.3 86 44.2
Peaxi162Scf00009g01231 Petunia axillaris HOM05D000475 ORTHO05D000343 5.2e-10 69.3 108 43.5
FvH4_6g10591 Fragaria vesca HOM05D000475 ORTHO05D000343 1.2e-09 68.2 314 27.4
TWI63G0323 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 1.2e-09 68.2 149 33.6
Aqoxy3G02479 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 1.5e-09 67.8 198 32.3
Gohir.A07G164778 Gossypium hirsutum HOM05D000475 ORTHO05D011666 1.5e-09 67.8 116 39.7
CANSAT56G0883 Cannabis sativa HOM05D000475 ORTHO05D000343 2.0e-09 67.4 119 37.8
Lj4g0019173 Lotus japonicus HOM05D000475 ORTHO05D000343 2.0e-09 67.4 110 40.0
BcaC06g31955 Brassica carinata HOM05D000389 ORTHO05D000287 2.6e-09 67.0 165 33.3
ECA238G4627 Erigeron canadensis HOM05D000475 ORTHO05D000343 3.4e-09 66.6 141 36.2
PGSC0003DMG400011621 Solanum tuberosum HOM05D000475 ORTHO05D000343 4.4e-09 66.2 281 28.8
THA.LOC104816526 Tarenaya hassleriana HOM05D000475 ORTHO05D000343 4.4e-09 66.2 109 36.7
Carub.0006s0017 Capsella rubella HOM05D000475 ORTHO05D000343 7.5e-09 65.5 143 30.8
MELO3C009131.2 Cucumis melo HOM05D000475 ORTHO05D000343 7.5e-09 65.5 288 27.1
ECA236G0948 Erigeron canadensis HOM05D000475 ORTHO05D000343 1.3e-08 64.7 131 33.6
HanXRQChr16g0510221 Helianthus annuus HOM05D000475 ORTHO05D000343 1.3e-08 64.7 120 37.5
PSO478G1812 Papaver somniferum HOM05D000475 ORTHO05D000343 1.3e-08 64.7 125 35.2
AUR62012320 Chenopodium quinoa HOM05D000475 ORTHO05D000343 1.7e-08 64.3 108 32.4
BcaC06g31981 Brassica carinata HOM05D000475 ORTHO05D000343 2.2e-08 63.9 282 26.2
Thhalv10012920m.g Eutrema salsugineum HOM05D000475 ORTHO05D000343 2.2e-08 63.9 242 27.7
Lalb_Chr07g0191001 Lupinus albus HOM05D000475 ORTHO05D011666 2.2e-08 63.9 74 47.3
TPR.G4429 Trifolium pratense HOM05D000475 ORTHO05D000343 2.9e-08 63.5 115 36.5
Atru.chr8.2340 Acer truncatum HOM05D000475 ORTHO05D000343 6.4e-08 62.4 87 42.5
Aa31LG1G23280 Aethionema arabicum HOM05D000475 ORTHO05D000343 6.4e-08 62.4 285 24.6
MD04G1166900 Malus domestica HOM05D000475 ORTHO05D000343 6.4e-08 62.4 112 38.4
HanXRQChr16g0510201 Helianthus annuus HOM05D000475 ORTHO05D000343 8.3e-08 62.0 119 37.0
Lj1A962T107 Lonicera japonica HOM05D000475 ORTHO05D000343 8.3e-08 62.0 79 40.5
MD12G1180200 Malus domestica HOM05D000475 ORTHO05D000343 8.3e-08 62.0 301 27.6
Ca_07698_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 1.1e-07 61.6 132 32.6
Rhsim03G0110100 Rhododendron simsii HOM05D000475 ORTHO05D011666 1.1e-07 61.6 54 55.6
PSO017G1695 Papaver somniferum HOM05D000475 ORTHO05D000343 1.4e-07 61.2 247 26.7
Sc11g0005450 Simmondsia chinensis HOM05D000475 ORTHO05D011666 1.4e-07 61.2 131 31.3
CAN.G756.29 Capsicum annuum HOM05D000222 ORTHO05D012343 3.2e-07 60.1 76 42.1
AUR62022960 Chenopodium quinoa HOM05D000475 ORTHO05D000343 5.4e-07 59.3 108 31.5
ECA238G4258 Erigeron canadensis HOM05D000475 ORTHO05D000343 5.4e-07 59.3 167 29.3
ECA248G1682 Erigeron canadensis HOM05D000475 ORTHO05D000343 5.4e-07 59.3 292 25.3
EL10Ac2g04912 Beta vulgaris HOM05D000475 ORTHO05D000343 7.0e-07 58.9 107 32.7
ATR0594G100 Amborella trichopoda HOM05D000475 ORTHO05D000343 9.2e-07 58.5 180 28.9
CSS0035305 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D011666 4.6e-06 56.2 46 54.3
DCAR_028563 Daucus carota HOM05D000475 ORTHO05D000343 4.6e-06 56.2 290 26.6
Migut.F00623 Erythranthe guttata HOM05D000475 ORTHO05D000343 4.6e-06 56.2 173 28.9
Lsat_1_v5_gn_8_104940 Lactuca sativa HOM05D000475 ORTHO05D000343 5.9e-06 55.8 285 26.0
Nitab4.5_0002854g0040 Nicotiana tabacum HOM05D000475 ORTHO05D000343 5.9e-06 55.8 170 32.4
THA.LOC104816176 Tarenaya hassleriana HOM05D000475 ORTHO05D000343 5.9e-06 55.8 289 26.0
ClCG11G005960 Citrullus lanatus HOM05D000475 ORTHO05D000343 7.8e-06 55.5 153 30.7
RcHm_v2.0_Chr3g0461581 Rosa chinensis HOM05D000475 ORTHO05D000343 7.8e-06 55.5 319 25.7


User provided reference genes

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