Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 9.1e-198 693.3 344 100.0
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 5.5e-126 454.9 361 65.9
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 6.2e-122 441.4 364 63.5
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.8e-121 439.9 347 65.1
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.2e-117 427.2 351 64.1
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 9.1e-105 384.4 354 56.5
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 9.1e-105 384.4 354 56.5
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 5.0e-103 378.6 356 57.3
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 1.4e-102 377.1 359 56.8
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 8.8e-100 367.9 355 55.2
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 2.6e-99 366.3 356 54.8
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 3.3e-99 365.9 353 54.7
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 4.8e-98 362.1 355 56.1
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 4.1e-97 359.0 368 52.7
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 7.0e-97 358.2 351 54.4
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.6e-96 357.1 351 54.4
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.0e-96 356.7 356 53.4
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 1.5e-94 350.5 353 54.4
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.9e-94 350.1 349 53.3
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.2e-93 347.4 372 50.8
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 2.1e-93 346.7 361 51.5
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 6.1e-93 345.1 351 53.8
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.8e-92 343.6 347 54.2
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 4.0e-92 342.4 372 50.5
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 6.7e-92 341.7 345 53.0
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.3e-91 339.3 342 53.2
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 3.3e-91 339.3 356 51.7
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 4.4e-91 339.0 355 51.0
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 5.7e-91 338.6 372 50.0
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 7.5e-91 338.2 354 52.5
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 1.3e-90 337.4 358 52.0
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 2.8e-90 336.3 354 51.1
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 3.7e-90 335.9 357 50.7
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 6.3e-90 335.1 368 51.6
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.1e-89 334.3 358 51.4
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 1.8e-89 333.6 358 51.7
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.8e-89 333.6 354 53.1
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 3.1e-89 332.8 350 51.7
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 3.1e-89 332.8 370 51.4
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 3.1e-89 332.8 356 51.4
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 3.1e-89 332.8 351 50.4
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 7.0e-89 331.6 347 51.6
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.6e-88 330.5 354 50.8
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 4.5e-88 328.9 352 51.7
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 7.7e-88 328.2 372 49.5
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.7e-87 327.0 356 52.0
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 1.7e-87 327.0 347 51.9
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 2.9e-87 326.2 258 59.3
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 5.0e-87 325.5 267 58.4
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 6.5e-87 325.1 372 49.7
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 6.5e-87 325.1 372 49.7
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 8.5e-87 324.7 356 52.0
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 1.1e-86 324.3 356 51.1
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 5.5e-86 322.0 356 50.8
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.2e-85 320.9 355 49.0
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 2.1e-85 320.1 353 51.0
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 2.7e-85 319.7 350 50.9
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 3.6e-85 319.3 349 52.1
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 3.6e-85 319.3 349 48.1
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 8.0e-85 318.2 351 51.3
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.4e-84 317.4 358 51.7
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.4e-84 317.4 359 49.9
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 1.4e-84 317.4 355 48.7
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.4e-84 317.4 352 49.7
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 2.3e-84 316.6 277 53.8
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 2.3e-84 316.6 267 56.9
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.3e-84 316.6 357 49.9
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.5e-83 313.9 353 50.1
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 5.7e-83 312.0 262 56.5
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 5.7e-83 312.0 346 50.6
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 7.5e-83 311.6 268 57.5
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 9.8e-83 311.2 334 49.7
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 1.3e-82 310.8 270 57.8
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.3e-82 310.8 306 52.0
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 3.7e-82 309.3 347 49.3
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 1.1e-81 307.8 359 49.3
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.8e-81 307.0 359 49.0
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 1.8e-81 307.0 359 47.9
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 4.1e-81 305.8 358 48.0
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 9.1e-81 304.7 360 48.6
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 1.2e-80 304.3 270 56.7
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.2e-80 304.3 359 48.5
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 2.0e-80 303.5 264 56.4
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.7e-80 303.1 350 47.1
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 2.7e-80 303.1 359 47.9
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 2.7e-80 303.1 347 48.7
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 5.9e-80 302.0 349 51.6
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 7.7e-80 301.6 347 48.7
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.1e-78 297.7 349 48.7
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 3.2e-78 296.2 354 47.2
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 5.5e-78 295.4 235 63.8
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 1.2e-77 294.3 348 48.6
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.6e-77 293.9 348 47.7
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.1e-77 293.5 272 55.5
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 3.6e-77 292.7 274 57.7
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.6e-77 292.7 266 56.8
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 4.7e-77 292.4 345 48.7
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 4.7e-77 292.4 268 54.5
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 8.0e-77 291.6 262 56.1
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.4e-76 290.8 356 47.2
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 1.4e-76 290.8 266 56.8
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.8e-76 290.4 266 56.4
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.3e-76 290.0 390 44.6
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 2.3e-76 290.0 271 53.1
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.0e-76 289.7 386 44.3
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.0e-76 289.7 386 44.3
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 4.0e-76 289.3 356 47.8
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.5e-75 287.3 269 54.6
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 2.0e-75 287.0 350 47.1
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 2.0e-75 287.0 260 54.2
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 3.4e-75 286.2 269 55.4
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 7.5e-75 285.0 353 47.3
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 1.7e-74 283.9 349 47.0
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 1.7e-74 283.9 350 45.7
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 3.7e-74 282.7 317 48.6
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 8.3e-74 281.6 364 44.0
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 1.1e-73 281.2 344 45.1
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.4e-73 280.8 266 52.3
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.8e-73 280.4 275 53.1
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 7.0e-73 278.5 276 50.7
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 5.0e-71 272.3 396 42.2
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.1e-70 271.2 317 47.3
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 1.9e-70 270.4 255 55.7
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 2.5e-70 270.0 360 42.2
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 7.3e-70 268.5 349 45.3
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.8e-69 266.5 313 48.9
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 1.0e-68 264.6 267 52.4
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.4e-68 264.2 261 51.7
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 8.9e-68 261.5 272 48.9
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 8.9e-68 261.5 272 48.9
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.4e-67 259.6 267 51.7
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 5.7e-67 258.8 272 48.5
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.3e-66 257.7 369 40.4
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.2e-66 256.9 309 50.5
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 8.3e-66 255.0 233 53.2
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 1.1e-65 254.6 265 50.9
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 3.2e-65 253.1 316 46.2
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 5.0e-63 245.7 311 45.3
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 1.1e-62 244.6 229 52.0
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 8.0e-61 238.4 352 42.6
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 1.0e-60 238.0 215 56.3
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.8e-60 237.3 345 43.8
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 6.4e-58 228.8 314 43.0
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 5.0e-55 219.2 213 54.5
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.4e-52 211.1 257 46.3
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 4.0e-52 209.5 340 37.4
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 3.4e-51 206.5 208 51.0
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 4.6e-48 196.1 305 39.0
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.2e-45 188.0 313 35.1
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 6.4e-42 175.6 262 40.8
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 3.3e-38 163.3 178 46.6
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 4.3e-38 162.9 119 59.7
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 7.3e-38 162.2 252 38.1
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.6e-37 161.0 179 50.8
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 3.0e-31 140.2 85 70.6
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 3.9e-31 139.8 446 25.6
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 6.6e-31 139.0 151 52.3
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 2.5e-30 137.1 198 43.9
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 3.6e-29 133.3 163 50.3
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 4.8e-29 132.9 157 45.9
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 7.6e-27 125.6 295 29.2
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 1.3e-26 124.8 112 52.7
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.7e-26 124.4 205 38.5
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 9.3e-25 118.6 156 42.9
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 3.0e-23 113.6 92 59.8
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 8.4e-18 95.5 114 43.0
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 8.4e-18 95.5 85 58.8
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.9e-17 94.4 105 44.8
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 1.2e-16 91.7 280 28.2
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 1.8e-15 87.8 105 40.0
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.9e-15 86.7 101 43.6
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.5e-14 84.7 123 39.8
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 2.1e-13 80.9 132 31.8
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 6.2e-13 79.3 89 44.9
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 6.2e-13 79.3 116 36.2
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 4.2e-09 66.6 154 32.5
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 2.7e-08 63.9 43 72.1
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 7.9e-08 62.4 55 50.9
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 1.0e-07 62.0 43 60.5
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.3e-07 60.8 58 56.9
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 3.9e-07 60.1 56 48.2
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 8.7e-07 58.9 121 33.9


User provided reference genes

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