Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 5.1e-91 337.8 179 100.0
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 1.6e-57 226.5 178 70.2
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 2.8e-57 225.7 177 70.1
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 3.4e-55 218.8 174 69.0
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 3.8e-54 215.3 183 67.2
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 2.5e-53 212.6 177 63.3
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 1.8e-51 206.5 177 61.6
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 5.1e-51 204.9 176 61.4
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 5.1e-51 204.9 176 63.1
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 6.7e-51 204.5 175 62.3
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 8.7e-51 204.1 177 61.6
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.1e-50 203.8 177 61.0
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.1e-50 203.8 177 61.0
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 4.3e-50 201.8 176 61.4
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 7.4e-50 201.1 175 62.3
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 2.8e-49 199.1 175 61.7
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.8e-49 199.1 175 61.7
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 3.7e-49 198.7 177 59.9
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 3.7e-49 198.7 177 61.0
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 3.7e-49 198.7 177 58.2
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 8.2e-49 197.6 177 59.9
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 1.1e-48 197.2 177 57.6
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 1.4e-48 196.8 177 59.3
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 2.4e-48 196.1 177 59.9
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 2.4e-48 196.1 176 59.7
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 2.4e-48 196.1 177 57.6
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 2.4e-48 196.1 175 61.7
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 6.9e-48 194.5 178 59.6
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 6.9e-48 194.5 177 59.9
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 9.0e-48 194.1 175 59.4
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 1.2e-47 193.7 177 59.9
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 1.5e-47 193.4 177 58.2
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 1.5e-47 193.4 177 57.6
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 2.0e-47 193.0 177 59.9
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 2.0e-47 193.0 177 59.9
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 3.4e-47 192.2 176 58.0
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 3.4e-47 192.2 177 57.6
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 4.5e-47 191.8 177 58.2
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 5.9e-47 191.4 177 57.6
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 5.9e-47 191.4 177 59.3
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 5.9e-47 191.4 177 58.8
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 5.9e-47 191.4 178 60.7
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 7.7e-47 191.0 176 56.8
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 7.7e-47 191.0 177 58.2
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 1.0e-46 190.7 177 59.3
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 1.0e-46 190.7 177 57.6
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 1.3e-46 190.3 177 59.3
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.7e-46 189.9 167 61.7
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 2.2e-46 189.5 177 57.6
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 2.9e-46 189.1 167 61.1
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 2.9e-46 189.1 178 60.1
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 3.8e-46 188.7 177 57.1
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 5.0e-46 188.3 176 57.4
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 5.0e-46 188.3 176 57.4
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 1.1e-45 187.2 177 57.1
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 1.9e-45 186.4 176 55.7
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 2.5e-45 186.0 177 56.5
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 4.2e-45 185.3 177 57.6
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 5.5e-45 184.9 177 54.8
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 5.5e-45 184.9 172 56.4
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 5.5e-45 184.9 177 56.5
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 9.4e-45 184.1 177 54.8
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 9.4e-45 184.1 177 54.2
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 1.6e-44 183.3 176 55.1
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 2.1e-44 183.0 177 55.4
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 2.1e-44 183.0 179 54.2
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 2.7e-44 182.6 177 57.6
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 2.7e-44 182.6 177 57.6
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 6.1e-44 181.4 177 54.2
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 7.9e-44 181.0 177 54.2
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 1.0e-43 180.6 177 55.9
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 1.0e-43 180.6 177 54.2
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 1.4e-43 180.3 176 56.2
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 1.4e-43 180.3 176 56.2
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 1.8e-43 179.9 177 53.7
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 1.8e-43 179.9 177 52.5
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 2.3e-43 179.5 177 53.1
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 2.3e-43 179.5 177 53.7
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 2.3e-43 179.5 177 53.1
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 3.0e-43 179.1 177 54.2
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 3.0e-43 179.1 177 55.4
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 8.8e-43 177.6 177 53.1
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 8.8e-43 177.6 177 52.5
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 1.5e-42 176.8 177 52.5
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 2.0e-42 176.4 177 53.7
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 2.5e-42 176.0 177 53.7
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 3.3e-42 175.6 177 53.1
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 3.3e-42 175.6 177 52.5
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 4.3e-42 175.3 177 53.7
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 4.3e-42 175.3 174 54.0
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 5.7e-42 174.9 177 53.1
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 5.7e-42 174.9 177 54.8
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 7.4e-42 174.5 187 54.0
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 2.0e-39 166.4 136 67.6
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 3.4e-39 165.6 177 50.3
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 7.7e-39 164.5 177 51.4
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 5.5e-37 158.3 181 50.3
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 3.9e-35 152.1 174 46.6
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 5.7e-34 148.3 134 61.2
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 3.7e-33 145.6 177 45.2
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.2e-31 140.6 177 47.5
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 1.5e-31 140.2 84 81.0
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 1.7e-30 136.7 115 62.6
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 7.2e-29 131.3 83 73.5
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 3.6e-28 129.0 177 44.1
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 2.0e-26 123.2 84 69.0
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 1.3e-25 120.6 176 39.2
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 1.7e-25 120.2 165 44.2
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 6.3e-25 118.2 84 65.5
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 7.2e-21 104.8 181 38.7
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 5.2e-19 98.6 62 75.8
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 1.3e-17 94.0 65 70.8
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 1.4e-16 90.5 113 52.2
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 2.4e-16 89.7 179 33.5
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 4.1e-16 89.0 104 49.0
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 4.5e-15 85.5 147 32.0
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.3e-11 73.2 175 29.7
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.3e-11 73.2 175 29.7
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 5.7e-10 68.6 141 34.0
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 4.5e-07 58.9 175 28.0
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 1.3e-06 57.4 120 34.2
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 5.0e-06 55.5 37 64.9
C04p10650 Brassica napus HOM05D001890 ORTHO05D008163 8.6e-06 54.7 31 71.0


User provided reference genes

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