Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 5.5e-240 833.9 437 100.0
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.0e-181 639.4 432 76.9
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 4.0e-174 615.1 427 73.5
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 5.8e-173 611.3 427 74.5
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 1.2e-157 560.5 425 69.2
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 2.0e-157 559.7 428 68.7
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 2.6e-157 559.3 425 69.2
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 7.6e-157 557.8 433 70.0
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 4.9e-156 555.1 431 66.6
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 8.4e-156 554.3 425 66.8
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.1e-155 553.9 428 68.2
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.5e-154 548.9 429 66.9
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 6.0e-154 548.1 425 67.1
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 7.9e-154 547.7 443 66.1
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.3e-153 546.2 426 67.4
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 3.0e-153 545.8 433 64.2
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 6.7e-153 544.7 425 66.1
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 2.5e-152 542.7 428 65.7
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 3.3e-152 542.3 419 67.3
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 3.3e-152 542.3 431 65.9
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 5.6e-152 541.6 428 65.0
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 6.2e-151 538.1 421 65.8
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 3.1e-150 535.8 421 65.3
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 6.9e-150 534.6 425 64.7
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 1.5e-149 533.5 430 65.6
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.6e-149 532.7 426 64.8
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 5.8e-149 531.6 425 64.9
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 1.7e-148 530.0 426 65.3
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.9e-148 529.3 428 65.7
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 1.9e-147 526.6 430 63.0
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.9e-147 526.6 420 65.2
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.2e-147 525.4 426 66.0
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.6e-146 523.5 442 62.9
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 1.6e-146 523.5 429 62.9
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 4.6e-146 521.9 425 64.0
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 3.9e-145 518.8 430 64.2
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 6.7e-145 518.1 430 64.0
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 6.7e-145 518.1 428 63.6
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 1.9e-144 516.5 425 62.6
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 3.3e-144 515.8 432 63.7
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 7.4e-144 514.6 428 63.1
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 9.6e-144 514.2 424 61.8
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.3e-143 513.8 434 62.9
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.3e-143 513.8 431 61.5
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 1.6e-143 513.5 432 61.3
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 2.1e-143 513.1 422 64.2
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 2.8e-143 512.7 431 61.5
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 3.7e-143 512.3 425 62.8
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.7e-143 512.3 424 62.7
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 3.1e-142 509.2 429 61.3
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 3.1e-142 509.2 429 61.8
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 5.3e-142 508.4 427 62.5
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 5.3e-142 508.4 437 61.3
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.2e-141 507.3 429 61.1
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.5e-141 506.9 428 61.2
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.5e-141 506.9 437 60.9
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 1.5e-141 506.9 440 62.7
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 2.0e-141 506.5 428 61.9
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.6e-141 506.1 425 62.1
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 3.4e-141 505.8 426 63.6
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 3.4e-141 505.8 426 63.6
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 4.5e-141 505.4 436 62.2
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 5.8e-141 505.0 427 62.3
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 5.8e-141 505.0 425 61.9
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 7.6e-141 504.6 435 60.0
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 7.6e-141 504.6 428 61.2
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 1.3e-140 503.8 436 61.7
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 1.7e-140 503.4 428 62.4
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.7e-140 503.4 428 62.1
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 1.7e-140 503.4 428 62.4
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 1.7e-140 503.4 439 60.8
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.2e-140 503.1 431 63.6
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 2.9e-140 502.7 428 62.4
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 6.5e-140 501.5 428 61.4
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 8.4e-140 501.1 428 61.2
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 8.4e-140 501.1 437 60.4
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 1.1e-139 500.7 425 61.4
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 1.9e-139 500.0 427 61.1
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.9e-139 500.0 434 61.5
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.2e-138 497.3 459 59.9
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 3.5e-138 495.7 436 59.6
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 4.6e-138 495.4 432 60.0
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 6.1e-138 495.0 440 61.1
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 6.1e-138 495.0 409 63.3
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 7.9e-138 494.6 426 62.2
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 1.3e-137 493.8 427 61.4
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 1.8e-137 493.4 425 60.5
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 1.1e-136 490.7 425 60.7
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 9.7e-136 487.6 428 60.5
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 2.8e-135 486.1 414 61.1
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 8.2e-135 484.6 443 57.8
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 8.2e-135 484.6 407 61.4
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 2.6e-133 479.6 421 62.2
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 2.6e-133 479.6 370 66.8
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.6e-133 479.6 414 59.9
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 3.8e-132 475.7 420 60.0
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 3.8e-132 475.7 434 58.3
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.1e-131 474.2 408 59.8
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.2e-130 470.7 374 63.6
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 1.6e-130 470.3 440 58.6
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 4.6e-130 468.8 408 61.3
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.6e-130 468.8 507 52.1
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 7.9e-130 468.0 429 57.8
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.8e-129 466.8 420 61.7
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 2.3e-129 466.5 299 79.9
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 3.0e-129 466.1 405 62.5
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 8.8e-129 464.5 429 58.0
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 1.1e-128 464.2 432 57.9
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.5e-128 463.8 408 60.8
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 7.4e-128 461.5 433 55.9
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 2.8e-127 459.5 469 56.1
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 6.3e-127 458.4 430 59.5
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 8.2e-127 458.0 437 57.4
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 1.4e-126 457.2 430 58.6
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.7e-122 443.0 440 56.6
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 3.0e-121 439.5 425 56.5
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.0e-116 424.5 424 57.1
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.0e-116 422.2 428 57.0
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 4.7e-114 415.6 426 54.9
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 6.1e-114 415.2 372 58.6
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 6.5e-108 395.2 310 66.5
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 2.0e-104 383.6 504 45.4
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 3.1e-102 376.3 344 59.0
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 3.6e-98 362.8 300 62.3
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 8.0e-98 361.7 431 50.1
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 6.3e-95 352.1 377 55.2
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.1e-94 349.7 433 47.8
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.4e-86 324.3 300 57.0
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 4.1e-86 322.8 406 45.8
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 8.6e-84 315.1 433 42.7
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.5e-72 277.7 420 44.0
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 3.2e-70 270.0 246 58.1
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 8.6e-68 261.9 319 48.6
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 7.3e-67 258.8 179 71.5
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.4e-62 244.6 198 65.7
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.5e-59 234.6 176 64.8
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 3.3e-59 233.4 178 65.7
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.6e-53 214.5 192 62.0
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.3e-52 211.5 180 62.2
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.0e-49 199.9 157 67.5
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.9e-41 172.6 144 66.7
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 9.0e-41 172.2 139 59.7
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 9.6e-35 152.1 120 65.8
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 1.4e-30 138.3 242 38.4
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 5.7e-27 126.3 112 61.6
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 2.1e-26 124.4 81 72.8
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.1e-25 122.1 88 65.9
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 3.1e-17 94.0 79 59.5
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 3.4e-16 90.5 374 26.7
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.9e-15 87.4 101 52.5
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.9e-14 84.7 114 44.7
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 3.6e-13 80.5 166 35.5
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 1.5e-11 75.1 432 26.2
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 3.7e-10 70.5 265 23.8
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 6.3e-10 69.7 196 27.0
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.4e-09 68.6 196 26.5
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.4e-09 68.6 194 26.8
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 4.1e-09 67.0 296 23.3
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.9e-09 66.2 195 28.7
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 6.9e-09 66.2 195 28.2
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.2e-08 65.5 195 27.2
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 1.5e-08 65.1 192 26.6
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 2.0e-08 64.7 195 27.2
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 3.4e-08 63.9 250 24.8
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 3.4e-08 63.9 195 27.2
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.5e-08 63.5 195 28.7
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 5.9e-08 63.2 200 26.0
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 7.7e-08 62.8 243 21.4
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 1.3e-07 62.0 195 24.6
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.7e-07 61.6 232 24.1
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.7e-07 61.6 198 26.3
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 6.5e-07 59.7 332 22.6
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 8.5e-07 59.3 195 25.1
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 1.4e-06 58.5 48 58.3
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.4e-06 58.5 245 24.1
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 4.2e-06 57.0 40 65.0


User provided reference genes

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