Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 6.7e-240 833.6 407 100.0
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.5e-194 682.2 407 81.8
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.8e-192 676.0 407 81.1
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.8e-189 666.0 407 77.1
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 1.2e-180 636.7 437 73.2
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 7.8e-172 607.4 436 68.8
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.0e-163 580.5 436 67.7
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 2.4e-160 569.3 436 65.4
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 4.9e-158 561.6 438 63.7
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 8.4e-158 560.8 438 64.4
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 7.1e-157 557.8 437 65.0
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 7.1e-157 557.8 437 64.1
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 1.6e-156 556.6 436 64.0
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 6.0e-156 554.7 434 63.8
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 5.1e-155 551.6 440 63.4
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 1.9e-154 549.7 407 66.8
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 4.3e-154 548.5 436 63.8
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 2.8e-153 545.8 441 62.6
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.4e-152 542.7 440 62.3
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 3.1e-152 542.3 438 62.6
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 3.1e-152 542.3 437 62.9
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 6.9e-152 541.2 438 63.2
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 9.0e-152 540.8 441 62.1
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 1.2e-151 540.4 442 63.6
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 5.8e-151 538.1 442 63.3
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 5.8e-151 538.1 440 60.7
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 5.8e-151 538.1 439 61.7
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 7.6e-151 537.7 441 62.1
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 2.2e-150 536.2 435 62.1
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 6.4e-150 534.6 442 60.9
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 3.2e-149 532.3 439 61.5
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 4.2e-149 531.9 439 63.1
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 4.2e-149 531.9 439 63.1
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 7.1e-149 531.2 444 63.5
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 7.1e-149 531.2 440 59.8
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 9.3e-149 530.8 440 62.7
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.1e-148 529.6 441 61.5
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.0e-147 527.3 442 61.3
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 1.7e-147 526.6 461 59.2
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 3.0e-147 525.8 411 64.0
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.1e-146 523.9 440 61.8
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.5e-146 523.5 441 61.0
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.5e-146 522.7 442 60.9
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 4.3e-146 521.9 435 60.5
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 4.3e-146 521.9 439 61.3
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 5.6e-146 521.5 438 60.3
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 9.6e-146 520.8 441 61.2
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 1.3e-145 520.4 440 62.7
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.3e-145 520.4 437 59.5
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 4.8e-145 518.5 443 63.2
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 4.8e-145 518.5 438 59.4
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 6.2e-145 518.1 436 59.2
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.8e-144 516.5 437 60.4
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 1.8e-144 516.5 438 59.8
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.0e-144 514.2 434 60.8
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 2.9e-142 509.2 440 60.2
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 8.4e-142 507.7 444 60.8
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.1e-141 507.3 440 59.1
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 1.4e-141 506.9 437 59.0
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 3.2e-141 505.8 442 59.0
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.2e-141 505.4 441 60.3
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.4e-141 505.0 436 60.6
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 5.4e-141 505.0 438 59.6
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 7.1e-141 504.6 444 59.7
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 9.3e-141 504.2 479 57.0
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 9.3e-141 504.2 489 55.0
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 9.3e-141 504.2 479 54.9
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.2e-140 503.8 479 55.1
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 4.6e-140 501.9 391 64.5
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 6.0e-140 501.5 479 54.7
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 7.9e-140 501.1 442 57.2
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.3e-139 500.4 481 54.5
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.8e-139 500.0 454 58.8
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.3e-139 499.6 477 56.6
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 3.9e-139 498.8 505 51.7
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 8.7e-139 497.7 473 54.1
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 1.1e-138 497.3 451 57.4
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 2.5e-138 496.1 482 54.8
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 3.3e-138 495.7 442 58.6
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 7.4e-138 494.6 451 57.2
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 1.6e-137 493.4 442 58.1
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 2.1e-137 493.0 437 60.0
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 4.8e-137 491.9 436 58.5
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.4e-136 490.3 486 53.9
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 4.5e-135 485.3 438 57.8
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 5.8e-135 485.0 371 65.8
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 9.9e-135 484.2 446 57.4
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.3e-134 483.8 406 60.8
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 3.8e-134 482.3 446 57.2
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 8.4e-134 481.1 391 62.9
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 3.2e-133 479.2 442 56.6
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 7.1e-133 478.0 439 56.0
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 2.1e-132 476.5 443 57.1
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 4.6e-132 475.3 444 57.2
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 6.0e-132 474.9 438 56.2
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 7.9e-132 474.6 445 57.1
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.0e-131 474.2 438 56.6
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.0e-131 472.6 501 50.9
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 8.7e-131 471.1 437 56.5
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 1.5e-130 470.3 438 56.6
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.9e-130 469.9 395 61.3
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 9.6e-130 467.6 437 56.8
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 9.6e-130 467.6 394 60.7
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 1.3e-129 467.2 435 56.3
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.6e-129 466.8 436 55.5
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 3.7e-129 465.7 436 56.0
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 3.4e-127 459.1 436 56.9
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.9e-126 456.1 435 55.2
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.1e-125 454.1 434 54.8
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 1.0e-123 447.6 448 54.7
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 3.0e-123 446.0 434 54.1
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 3.3e-122 442.6 434 53.9
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.1e-120 437.6 439 53.3
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 2.4e-120 436.4 438 53.2
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 4.1e-120 435.6 439 53.1
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 2.0e-119 433.3 436 53.2
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 4.5e-119 432.2 439 52.4
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 4.5e-119 432.2 439 52.4
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 4.2e-117 425.6 439 51.9
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.0e-110 404.4 356 59.6
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 1.7e-110 403.7 458 50.4
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.9e-110 402.9 456 49.8
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 2.3e-107 393.3 453 49.2
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 2.6e-106 389.8 356 57.6
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.2e-102 376.7 467 45.8
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.1e-101 374.4 438 48.4
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 9.4e-101 371.3 437 47.8
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 7.4e-98 361.7 250 69.6
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 1.8e-96 357.1 394 48.0
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 5.7e-90 335.5 241 65.6
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 7.2e-85 318.5 246 62.6
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.0e-83 314.7 281 54.1
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 5.4e-80 302.4 240 65.4
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.0e-79 300.4 273 55.7
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.0e-78 298.1 361 44.9
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.3e-75 287.0 297 50.8
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 8.9e-75 285.0 245 55.9
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 4.9e-73 279.3 488 37.3
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.8e-72 277.3 256 54.7
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 9.5e-69 265.0 261 49.8
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 2.1e-68 263.8 498 35.9
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 3.9e-62 243.0 437 33.9
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 2.3e-59 233.8 373 41.0
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 1.7e-54 217.6 188 59.6
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.4e-48 198.0 190 55.8
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.2e-47 194.9 428 33.9
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.0e-38 165.2 97 77.3
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 8.7e-38 162.2 95 76.8
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.3e-37 160.2 95 75.8
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 4.3e-37 159.8 190 49.5
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.6e-37 158.7 97 74.2
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-36 158.3 127 66.9
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 7.6e-34 149.1 86 74.4
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.7e-33 147.9 128 61.7
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 5.1e-30 136.3 174 43.1
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 5.1e-30 136.3 111 63.1
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 8.7e-30 135.6 169 44.4
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 3.4e-26 123.6 66 80.3
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 3.4e-26 123.6 66 80.3
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 4.6e-23 113.2 153 43.8
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.6e-20 104.8 90 48.9
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 9.0e-19 99.0 140 41.4
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 3.3e-13 80.5 44 84.1
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 4.8e-12 76.6 74 55.4
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 1.4e-11 75.1 45 73.3
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 1.4e-11 75.1 45 73.3


User provided reference genes

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