Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 3.6e-143 511.5 252 100.0
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 6.9e-110 401.0 252 75.8
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 6.4e-108 394.4 255 76.5
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 5.4e-99 364.8 251 69.7
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 3.0e-97 359.0 253 68.8
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 3.9e-97 358.6 253 69.6
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 4.3e-96 355.1 255 69.8
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 9.6e-96 354.0 252 70.6
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 1.3e-95 353.6 255 69.0
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.6e-95 353.2 254 68.9
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 2.1e-95 352.8 253 71.5
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 4.8e-95 351.7 252 69.4
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 6.2e-95 351.3 252 68.7
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 6.2e-95 351.3 253 70.0
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.1e-94 350.5 252 68.7
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.1e-94 350.5 253 68.0
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.1e-94 350.5 254 67.7
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.4e-94 349.4 263 66.2
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.4e-94 349.4 252 69.8
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 3.1e-94 349.0 254 69.7
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.1e-94 349.0 252 69.8
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 4.0e-94 348.6 252 69.4
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 5.3e-94 348.2 252 69.8
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 5.3e-94 348.2 255 68.6
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 5.3e-94 348.2 248 68.1
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 9.0e-94 347.4 252 68.3
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 9.0e-94 347.4 252 67.1
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 1.5e-93 346.7 251 67.3
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.0e-93 346.3 253 66.4
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 2.6e-93 345.9 253 70.0
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 3.4e-93 345.5 252 65.9
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 4.5e-93 345.1 252 67.9
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 5.8e-93 344.7 254 69.7
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 5.8e-93 344.7 253 66.8
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 7.6e-93 344.4 254 66.9
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 9.9e-93 344.0 252 67.5
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.3e-92 343.6 255 67.5
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 1.7e-92 343.2 252 66.7
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 1.7e-92 343.2 252 66.7
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.7e-92 343.2 253 68.4
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.7e-92 343.2 253 68.4
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.2e-92 342.8 253 68.4
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.9e-92 342.4 252 66.7
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.9e-92 342.4 252 65.5
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.9e-92 342.4 253 66.8
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 3.8e-92 342.0 252 66.3
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 3.8e-92 342.0 253 68.4
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 3.8e-92 342.0 253 66.8
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 4.9e-92 341.7 252 67.5
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 4.9e-92 341.7 253 68.4
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.9e-92 341.7 253 68.4
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 8.4e-92 340.9 256 68.0
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.1e-91 340.5 245 68.6
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.1e-91 340.5 252 66.3
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.9e-91 339.7 257 66.1
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 2.5e-91 339.3 252 66.3
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 2.5e-91 339.3 254 66.5
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.5e-91 339.3 253 66.8
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 3.2e-91 339.0 255 65.9
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 3.2e-91 339.0 254 66.5
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 4.2e-91 338.6 252 64.7
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 5.5e-91 338.2 253 67.2
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 5.5e-91 338.2 253 67.6
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 5.5e-91 338.2 251 63.7
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 7.1e-91 337.8 255 65.1
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 7.1e-91 337.8 255 66.3
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 9.3e-91 337.4 253 67.6
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.2e-90 337.0 252 65.5
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 1.2e-90 337.0 253 68.0
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 1.6e-90 336.7 251 63.3
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.7e-90 335.9 252 66.3
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 2.7e-90 335.9 255 65.5
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 3.5e-90 335.5 252 65.5
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.0e-89 334.0 252 65.1
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.0e-89 334.0 255 66.3
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.0e-89 334.0 255 66.3
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.8e-89 333.2 251 64.1
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 2.3e-89 332.8 252 64.7
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 3.0e-89 332.4 255 65.9
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 3.9e-89 332.0 251 66.5
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 3.9e-89 332.0 253 66.4
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 3.9e-89 332.0 248 66.1
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 8.7e-89 330.9 257 65.0
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 8.7e-89 330.9 255 61.6
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.1e-88 330.5 253 61.7
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.5e-88 330.1 255 66.3
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 1.9e-88 329.7 252 64.7
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.9e-88 329.7 253 68.0
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.3e-88 328.9 255 61.6
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.3e-88 328.6 248 65.7
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.3e-88 328.6 248 65.7
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 5.6e-88 328.2 242 66.1
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.1e-87 326.2 248 65.3
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 3.7e-87 325.5 254 65.4
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 6.2e-87 324.7 254 61.8
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.4e-86 323.6 254 62.6
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 4.0e-86 322.0 250 64.0
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.2e-85 320.5 244 64.3
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.6e-85 319.3 244 64.3
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 1.0e-84 317.4 250 63.2
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 2.2e-84 316.2 250 63.2
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 2.9e-84 315.8 253 62.5
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 6.5e-84 314.7 276 60.1
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 6.5e-84 314.7 276 60.1
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.4e-83 313.5 290 55.9
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 1.9e-83 313.2 245 64.5
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 1.9e-83 313.2 245 64.5
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 1.9e-83 313.2 256 62.1
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 1.9e-83 313.2 245 64.5
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.5e-83 312.8 252 61.1
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 5.5e-83 311.6 252 61.1
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 9.3e-83 310.8 245 64.1
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 9.3e-83 310.8 250 62.0
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 9.3e-83 310.8 253 62.1
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 7.9e-82 307.8 186 80.1
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 3.9e-81 305.4 244 62.3
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.5e-80 303.5 295 54.9
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 2.5e-80 302.8 178 82.6
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 8.2e-79 297.7 242 61.2
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.4e-78 296.2 228 65.8
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 6.9e-78 294.7 204 72.1
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 7.7e-77 291.2 194 72.7
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 8.5e-76 287.7 177 78.5
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.5e-75 286.2 253 58.5
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 7.2e-75 284.6 236 61.0
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 7.2e-75 284.6 248 59.7
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 4.6e-74 282.0 253 57.7
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.5e-72 276.9 253 56.5
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.5e-72 276.2 246 58.9
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 7.9e-66 254.6 156 77.6
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.1e-64 250.8 151 79.5
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 2.0e-64 250.0 146 81.5
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 2.6e-61 239.6 250 52.0
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 2.9e-60 236.1 251 47.8
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.7e-55 220.3 184 62.5
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.8e-54 216.9 183 57.4
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 1.0e-52 211.1 188 56.4
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 4.0e-49 199.1 178 57.9
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 1.4e-46 190.7 193 55.4
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 1.4e-46 190.7 193 55.4
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 1.2e-40 171.0 110 73.6
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 7.5e-40 168.3 183 51.4
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 7.0e-38 161.8 154 48.7
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.7e-36 157.1 88 83.0
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 4.2e-35 152.5 135 57.8
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 5.6e-27 125.6 76 81.6
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 3.6e-26 122.9 177 37.9
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 8.0e-26 121.7 80 71.2
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 1.1e-22 111.3 76 68.4
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 4.1e-22 109.4 99 56.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 4.1e-22 109.4 99 56.6
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.7e-21 106.7 171 36.8
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 1.7e-20 104.0 108 56.5
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 6.6e-20 102.1 75 68.0
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 7.1e-14 82.0 94 53.2
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 1.6e-13 80.9 83 56.6
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 1.1e-11 74.7 241 27.8
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.2e-10 71.2 183 28.4
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 1.6e-10 70.9 51 66.7
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 6.8e-09 65.5 124 39.5
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 8.3e-07 58.5 52 61.5
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.9e-06 57.4 38 71.1
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 5.4e-06 55.8 142 28.9


User provided reference genes

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