Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 4.1e-189 664.5 314 100.0
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 3.6e-124 448.7 257 79.8
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.6e-122 442.6 256 77.7
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.7e-121 439.9 277 74.4
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 4.8e-121 438.3 254 78.0
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 8.2e-121 437.6 275 74.9
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 2.6e-119 432.6 253 77.5
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 4.5e-119 431.8 260 75.0
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 5.0e-118 428.3 253 77.1
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 6.5e-118 427.9 254 76.0
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 6.5e-118 427.9 272 75.4
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 8.5e-118 427.6 257 75.1
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 1.5e-117 426.8 254 76.0
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 3.2e-117 425.6 254 75.6
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 3.2e-117 425.6 249 77.9
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 5.5e-117 424.9 254 75.6
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 7.2e-117 424.5 254 75.2
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 7.2e-117 424.5 253 76.7
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 9.4e-117 424.1 254 76.0
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 9.4e-117 424.1 249 78.7
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.2e-116 423.7 256 75.8
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.6e-116 423.3 254 74.8
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 4.7e-116 421.8 257 74.7
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 4.7e-116 421.8 257 74.7
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 6.1e-116 421.4 256 74.6
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 6.1e-116 421.4 256 74.6
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 8.0e-116 421.0 256 74.6
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 8.0e-116 421.0 254 74.4
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 8.0e-116 421.0 257 76.3
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 1.4e-115 420.2 256 74.2
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.4e-115 420.2 252 77.4
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.8e-115 419.9 254 74.0
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 2.3e-115 419.5 256 72.3
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 4.0e-115 418.7 252 75.0
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 4.0e-115 418.7 250 76.0
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 5.2e-115 418.3 254 74.0
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 6.8e-115 417.9 259 75.7
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 1.2e-114 417.2 257 74.7
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.5e-114 416.8 256 73.8
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 1.5e-114 416.8 256 75.8
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 2.0e-114 416.4 254 73.2
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 2.6e-114 416.0 256 73.4
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.6e-114 416.0 250 76.0
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 2.6e-114 416.0 259 75.3
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 2.6e-114 416.0 255 74.1
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 3.4e-114 415.6 254 73.2
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 5.7e-114 414.8 254 75.2
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 5.7e-114 414.8 253 74.7
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 9.8e-114 414.1 258 70.5
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 9.8e-114 414.1 254 75.2
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 1.3e-113 413.7 253 75.5
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.7e-113 413.3 256 74.6
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 2.2e-113 412.9 256 72.7
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 2.8e-113 412.5 256 73.4
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 3.7e-113 412.1 256 74.2
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 4.8e-113 411.8 253 73.1
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.1e-112 410.6 254 74.8
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.4e-112 410.2 253 73.1
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.4e-112 410.2 256 73.0
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.8e-112 409.8 254 74.0
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 2.4e-112 409.5 255 74.9
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 3.1e-112 409.1 256 71.9
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 4.1e-112 408.7 257 74.3
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 5.4e-112 408.3 258 72.9
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 5.4e-112 408.3 255 74.5
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 7.0e-112 407.9 250 74.8
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 7.0e-112 407.9 253 73.5
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 1.2e-111 407.1 249 76.3
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 2.0e-111 406.4 253 74.3
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 2.7e-111 406.0 256 71.9
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 3.5e-111 405.6 254 72.0
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 3.5e-111 405.6 246 74.4
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 4.5e-111 405.2 250 74.8
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 7.7e-111 404.4 249 75.1
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.3e-110 403.7 250 74.4
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.7e-110 403.3 249 74.7
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.7e-110 403.3 249 74.7
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 1.7e-110 403.3 252 72.2
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 2.9e-110 402.5 260 72.3
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 2.9e-110 402.5 254 74.0
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 3.8e-110 402.1 255 72.9
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.0e-110 401.7 250 74.0
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 6.5e-110 401.4 255 74.1
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 2.5e-109 399.4 279 66.3
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 2.5e-109 399.4 255 73.7
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 7.2e-109 397.9 254 71.3
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 7.2e-109 397.9 252 75.0
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 4.7e-108 395.2 233 75.1
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 4.7e-108 395.2 266 71.4
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.4e-107 393.7 235 75.7
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.4e-107 393.7 262 70.2
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.8e-107 393.3 254 72.0
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 4.0e-107 392.1 255 71.0
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 5.7e-106 388.3 256 70.7
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 3.7e-105 385.6 252 69.0
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 3.7e-105 385.6 251 70.9
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.1e-104 384.0 243 72.8
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 1.2e-103 380.6 256 68.8
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 2.0e-103 379.8 249 72.3
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 4.5e-103 378.6 284 63.4
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 5.9e-103 378.3 228 73.7
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.9e-102 375.9 225 75.1
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 3.3e-101 372.5 252 71.0
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 3.3e-101 372.5 264 68.2
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 8.0e-100 367.9 220 77.3
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 1.4e-99 367.1 253 68.0
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 3.0e-99 365.9 224 71.4
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 5.7e-98 361.7 255 65.5
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 7.5e-98 361.3 294 61.6
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 2.2e-97 359.8 234 67.9
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 2.9e-97 359.4 221 74.2
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 2.4e-96 356.3 258 65.5
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 5.4e-96 355.1 224 69.6
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.7e-95 352.8 240 64.6
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 7.8e-95 351.3 219 69.9
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 1.0e-94 350.9 219 69.9
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 6.6e-94 348.2 286 60.5
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 1.1e-93 347.4 202 76.7
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.9e-93 346.7 209 75.1
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 3.3e-93 345.9 287 62.4
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.2e-92 344.0 324 54.9
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 5.4e-88 328.6 256 62.1
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.3e-86 323.9 219 70.3
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 1.3e-86 323.9 186 76.3
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 7.5e-82 308.1 224 65.2
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.1e-80 304.3 161 81.4
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 5.1e-78 295.4 215 59.5
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.6e-76 290.4 190 65.8
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.5e-74 283.9 167 78.4
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 1.2e-68 264.2 155 74.8
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 7.3e-61 238.4 148 73.6
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 3.8e-57 226.1 241 51.0
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.4e-56 224.2 155 67.1
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 4.2e-56 222.6 129 73.6
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.3e-54 217.6 213 52.6
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.1e-51 206.5 122 78.7
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 8.4e-49 198.4 134 70.9
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.9e-30 136.3 105 64.8
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 5.3e-27 125.9 69 73.9
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.9e-24 117.5 79 70.9
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 3.6e-23 113.2 72 70.8
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 2.6e-21 107.1 81 65.4
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 3.7e-20 103.2 65 66.2
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 3.1e-19 100.1 65 70.8
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 2.0e-18 97.4 54 79.6
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 7.2e-16 89.0 89 51.7
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.2e-15 88.2 53 81.1
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.8e-14 84.3 72 58.3
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 3.9e-14 83.2 47 68.1
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 5.2e-14 82.8 84 50.0
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.5e-13 81.3 53 73.6
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 4.8e-12 76.3 53 67.9
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 4.1e-11 73.2 86 47.7
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 5.3e-11 72.8 81 51.9
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 6.5e-09 65.9 59 59.3


User provided reference genes

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