Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09957 Selenicereus undatus HOM05D000876 ORTHO05D002662 9.8e-118 426.8 212 100.0
Hund23719 Selenicereus undatus HOM05D000876 ORTHO05D000285 1.6e-80 303.1 248 64.5
Hund08681 Selenicereus undatus HOM05D000876 ORTHO05D000285 4.8e-80 301.6 250 63.6
Hund30880 Selenicereus undatus HOM05D000876 ORTHO05D000285 5.6e-73 278.1 231 64.1
Hund14971 Selenicereus undatus HOM05D000876 ORTHO05D000285 7.4e-73 277.7 248 59.3
Hund26462 Selenicereus undatus HOM05D000876 ORTHO05D002662 5.3e-71 271.6 204 71.6
Hund08047 Selenicereus undatus HOM05D000876 ORTHO05D002662 4.6e-67 258.5 198 70.7
Hund26024 Selenicereus undatus HOM05D000876 ORTHO05D002662 2.1e-59 233.0 255 53.7
Hund20247 Selenicereus undatus HOM05D000876 ORTHO05D002662 5.1e-50 201.8 192 58.9
Hund26464 Selenicereus undatus HOM05D000876 ORTHO05D002662 1.2e-43 180.6 178 57.3
Hund29878 Selenicereus undatus HOM05D000876 ORTHO05D000285 4.7e-43 178.7 178 56.7
Hund29879 Selenicereus undatus HOM05D000876 ORTHO05D000285 4.7e-43 178.7 178 56.7
Hund25751 Selenicereus undatus HOM05D000876 ORTHO05D002662 5.5e-36 155.2 121 66.1
Hund24071 Selenicereus undatus HOM05D000876 ORTHO05D000285 4.8e-32 142.1 149 53.7
Ah.03g141330 Amaranthus hybridus HOM05D000876 ORTHO05D000285 1.1e-23 114.4 218 39.4
Ah.10g031690 Amaranthus hybridus HOM05D000034 ORTHO05D000285 1.1e-23 114.4 218 39.4
Ah.01g014380 Amaranthus hybridus HOM05D000876 ORTHO05D002662 9.8e-17 91.3 170 37.6
Prupe.8G016500 Prunus persica HOM05D000876 ORTHO05D000285 3.8e-13 79.3 232 28.9
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 6.6e-13 78.6 213 27.7
CANSAT56G2973 Cannabis sativa HOM05D000876 ORTHO05D000285 1.1e-12 77.8 213 27.2
Hund12640 Selenicereus undatus HOM05D000876 ORTHO05D002662 1.5e-12 77.4 88 50.0
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 3.3e-12 76.3 213 27.2
CsaV3_5G004940 Cucumis sativus L. HOM05D000876 ORTHO05D000285 3.3e-12 76.3 222 29.3
CANSAT11G0810 Cannabis sativa HOM05D000876 ORTHO05D000285 9.5e-12 74.7 227 29.5
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 1.2e-11 74.3 218 27.1
CANSAT78G0895 Cannabis sativa HOM05D000876 ORTHO05D000285 1.6e-11 73.9 224 29.5
Potri.010G076000 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.6e-11 73.9 236 26.3
CANSAT11G0869 Cannabis sativa HOM05D000876 ORTHO05D000285 2.8e-11 73.2 227 30.0
CANSAT64G0985 Cannabis sativa HOM05D000876 ORTHO05D000285 2.8e-11 73.2 227 30.0
CANSAT25G2261 Cannabis sativa HOM05D000876 ORTHO05D000285 4.7e-11 72.4 227 29.5
Glyma.19G101700 Glycine max HOM05D000876 ORTHO05D000285 1.0e-10 71.2 212 28.8
Prupe.5G020800 Prunus persica HOM05D000876 ORTHO05D000285 1.0e-10 71.2 218 31.2
CANSAT21G1745 Cannabis sativa HOM05D000876 ORTHO05D000285 1.4e-10 70.9 227 29.1
PSO507G0009 Papaver somniferum HOM05D000876 ORTHO05D000285 1.4e-10 70.9 204 29.4
Prupe.5G207000 Prunus persica HOM05D000876 ORTHO05D000285 1.4e-10 70.9 218 31.2
Nitab4.5_0028034g0010 Nicotiana tabacum HOM05D007579 ORTHO05D000285 6.8e-10 68.6 203 28.1
arahy.Tifrunner.gnm1.ann1.PEG6DJ Arachis hypogaea HOM05D000034 ORTHO05D000037 8.9e-10 68.2 209 27.3
RcHm_v2.0_Chr4g0428601 Rosa chinensis HOM05D000876 ORTHO05D000285 1.2e-09 67.8 222 28.4
arahy.Tifrunner.gnm1.ann1.7Y6611 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.5e-09 67.4 210 25.7
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 2.6e-09 66.6 213 27.2
FvH4_6g39920 Fragaria vesca HOM05D000876 ORTHO05D000285 2.6e-09 66.6 221 28.5
FAN03G2155 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.6e-09 66.6 219 27.9
Hund12566 Selenicereus undatus HOM05D000876 ORTHO05D002662 3.4e-09 66.2 73 47.9
FvH4_7g08972 Fragaria vesca HOM05D000876 ORTHO05D000285 4.4e-09 65.9 216 27.8
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 4.4e-09 65.9 222 26.6
Sed0005915 Sechium edule HOM05D000876 ORTHO05D000285 4.4e-09 65.9 210 28.1
FAN05G1224 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.7e-09 65.5 216 27.8
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.7e-09 65.5 219 26.9
FAN17G2734 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.7e-09 65.5 217 25.3
Nitab4.5_0005587g0100 Nicotiana tabacum HOM05D007579 ORTHO05D000285 5.7e-09 65.5 224 26.3
CANSAT64G0872 Cannabis sativa HOM05D000876 ORTHO05D000285 7.5e-09 65.1 197 25.9
FvH4_7g12221 Fragaria vesca HOM05D000876 ORTHO05D000285 7.5e-09 65.1 216 27.8
Hma1.2p1_0148F.1_g066070 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 7.5e-09 65.1 206 28.2
Hma1.2p1_0148F.1_g066080 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 7.5e-09 65.1 206 28.2
arahy.Tifrunner.gnm1.ann1.2911W9 Arachis hypogaea HOM05D000876 ORTHO05D000285 9.8e-09 64.7 210 25.7
arahy.Tifrunner.gnm1.ann1.NV9TN2 Arachis hypogaea HOM05D000034 ORTHO05D000037 9.8e-09 64.7 218 24.3
CANSAT35G0018 Cannabis sativa HOM05D000876 ORTHO05D000285 9.8e-09 64.7 210 24.8
arahy.Tifrunner.gnm1.ann1.R6BV2D Arachis hypogaea HOM05D000876 ORTHO05D000285 1.3e-08 64.3 202 27.7
arahy.Tifrunner.gnm1.ann1.D3784E Arachis hypogaea HOM05D000034 ORTHO05D000037 1.7e-08 63.9 206 26.7
arahy.Tifrunner.gnm1.ann1.AG0B9Q Arachis hypogaea HOM05D000034 ORTHO05D000285 2.2e-08 63.5 209 27.8
FAN22G0137 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.2e-08 63.5 216 27.3
FAN05G0722 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.9e-08 63.2 223 25.6
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 2.9e-08 63.2 220 26.4
Lj1g0019277 Lotus japonicus HOM05D000876 ORTHO05D000285 2.9e-08 63.2 215 27.0
arahy.Tifrunner.gnm1.ann1.Z2QP4M Arachis hypogaea HOM05D000034 ORTHO05D000037 3.7e-08 62.8 209 27.8
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 3.7e-08 62.8 218 26.6
arahy.Tifrunner.gnm1.ann1.L4SQ9F Arachis hypogaea HOM05D000034 ORTHO05D000037 4.9e-08 62.4 209 27.8
arahy.Tifrunner.gnm1.ann1.X5RLQI Arachis hypogaea HOM05D000034 ORTHO05D000285 4.9e-08 62.4 204 27.9
Nitab4.5_0020090g0010 Nicotiana tabacum HOM05D007579 ORTHO05D000285 6.4e-08 62.0 233 25.3
CANSAT54G1231 Cannabis sativa HOM05D000876 ORTHO05D000285 8.3e-08 61.6 129 31.8
AUR62033764 Chenopodium quinoa HOM05D000876 ORTHO05D000285 8.3e-08 61.6 190 33.2
FAN06G3321 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.3e-08 61.6 226 27.0
Peaxi162Scf00002g02220 Petunia axillaris HOM05D000876 ORTHO05D000285 8.3e-08 61.6 205 28.3
Solyc10g049530.3 Solanum lycopersicum HOM05D000034 ORTHO05D000037 1.4e-07 60.8 240 25.4
Nitab4.5_0002356g0010 Nicotiana tabacum HOM05D007579 ORTHO05D000285 1.8e-07 60.5 235 26.4
Atru.chr5.3371 Acer truncatum HOM05D000876 ORTHO05D000285 2.4e-07 60.1 131 29.0
arahy.Tifrunner.gnm1.ann1.GG5U8X Arachis hypogaea HOM05D000876 ORTHO05D000285 2.4e-07 60.1 198 26.3
FAN02G2262 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.4e-07 60.1 207 25.1
arahy.Tifrunner.gnm1.ann1.T11VTH Arachis hypogaea HOM05D000034 ORTHO05D000037 3.2e-07 59.7 206 25.7
Atru.chr2.1367 Acer truncatum HOM05D000876 ORTHO05D000285 4.1e-07 59.3 133 28.6
FvH4_5g23913 Fragaria vesca HOM05D000876 ORTHO05D000285 4.1e-07 59.3 211 26.1
Peaxi162Scf00593g00324 Petunia axillaris HOM05D007579 ORTHO05D000285 4.1e-07 59.3 220 23.2
Nitab4.5_0003230g0090 Nicotiana tabacum HOM05D007579 ORTHO05D000285 7.0e-07 58.5 196 26.0
Actinidia09792 Actinidia chinensis HOM05D000876 ORTHO05D011747 9.2e-07 58.2 67 41.8
Potri.001G182200 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.2e-06 57.8 214 24.8
Hund25697 Selenicereus undatus HOM05D000876 ORTHO05D002662 1.2e-06 57.8 92 39.1
arahy.Tifrunner.gnm1.ann1.M8N6J9 Arachis hypogaea HOM05D000876 ORTHO05D000285 1.6e-06 57.4 92 32.6
FAN08G3019 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.6e-06 57.4 215 26.0
SGA_v2.0_scaffold136G35048 Striga asiatica HOM05D045704 ORTHO05D000285 1.6e-06 57.4 167 28.1
CARHR085850 Cardamine hirsuta HOM05D000876 ORTHO05D000285 2.0e-06 57.0 93 37.6
FAN26G1613 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.0e-06 57.0 201 28.9
CANSAT21G2246 Cannabis sativa HOM05D000876 ORTHO05D000285 3.5e-06 56.2 215 28.4
FAN05G4669 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.5e-06 56.2 209 24.9
RcHm_v2.0_Chr7g0199281 Rosa chinensis HOM05D000876 ORTHO05D000285 3.5e-06 56.2 224 26.8
AT5G05800 Arabidopsis thaliana HOM05D000876 ORTHO05D000285 4.6e-06 55.8 90 32.2
HanXRQChr05g0143471 Helianthus annuus HOM05D000876 ORTHO05D000285 4.6e-06 55.8 205 28.8
FvH4_2g31320 Fragaria vesca HOM05D000876 ORTHO05D022651 5.9e-06 55.5 203 28.1
HanXRQChr14g0461341 Helianthus annuus HOM05D000876 ORTHO05D000285 5.9e-06 55.5 204 27.5
arahy.Tifrunner.gnm1.ann1.01IP25 Arachis hypogaea HOM05D000034 ORTHO05D000037 7.8e-06 55.1 95 31.6
CSS0033511 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 7.8e-06 55.1 212 27.4
FAN12G2878 Fragaria x ananassa HOM05D000876 ORTHO05D000285 7.8e-06 55.1 209 25.8
Potri.008G196901 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.8e-06 55.1 226 25.2
PGSC0003DMG400041016 Solanum tuberosum HOM05D007579 ORTHO05D000285 7.8e-06 55.1 204 24.0


User provided reference genes

Program Settings