Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.6e-157 558.9 333 100.0
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.6e-82 310.5 321 66.7
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 7.5e-80 301.6 307 64.2
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 2.4e-78 296.6 295 69.5
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.6e-74 283.9 331 59.2
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 4.7e-74 282.3 332 58.1
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 8.0e-74 281.6 336 58.9
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 5.2e-73 278.9 331 57.4
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 8.3e-71 271.6 306 62.4
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.1e-70 271.2 260 70.8
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 5.4e-70 268.9 332 55.1
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 4.5e-69 265.8 328 57.0
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 7.8e-69 265.0 337 53.4
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 2.9e-68 263.1 341 53.1
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 5.0e-68 262.3 337 53.1
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 5.0e-68 262.3 333 49.5
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.9e-67 260.4 328 57.6
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 4.3e-67 259.2 330 57.0
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 5.6e-67 258.8 333 59.2
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 9.5e-67 258.1 296 54.1
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 3.1e-65 253.1 335 50.7
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 3.1e-65 253.1 352 47.2
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 8.9e-65 251.5 316 59.8
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 1.2e-64 251.1 338 53.0
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 3.4e-64 249.6 316 59.5
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 5.8e-64 248.8 316 59.5
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 2.2e-63 246.9 338 53.8
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 2.2e-63 246.9 325 54.2
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 2.9e-63 246.5 286 57.3
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 8.3e-63 245.0 332 57.5
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 1.9e-62 243.8 335 54.0
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 1.9e-62 243.8 306 53.6
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 3.2e-62 243.0 335 52.2
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.2e-61 241.1 310 53.9
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 1.6e-61 240.7 330 56.1
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.0e-61 240.4 332 50.6
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 2.0e-61 240.4 319 58.9
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 2.7e-61 240.0 336 53.9
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 3.5e-61 239.6 330 47.6
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 4.6e-61 239.2 337 46.3
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 6.0e-61 238.8 315 50.2
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.0e-60 238.0 332 52.4
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 1.7e-60 237.3 328 50.0
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 8.6e-60 235.0 315 53.0
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 4.3e-59 232.6 332 51.5
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 7.3e-59 231.9 299 49.8
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 1.8e-57 227.3 344 50.9
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 4.0e-57 226.1 334 50.9
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 8.9e-57 224.9 336 49.7
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 1.5e-56 224.2 313 50.8
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 3.4e-56 223.0 332 51.5
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 4.4e-56 222.6 317 54.6
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 5.8e-56 222.2 333 45.9
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 5.8e-56 222.2 329 51.4
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 7.5e-56 221.9 329 46.2
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 1.4e-54 217.6 330 51.2
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 1.9e-54 217.2 311 52.7
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 3.2e-54 216.5 330 50.3
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 4.6e-53 212.6 330 44.8
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 7.8e-53 211.8 321 46.4
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 1.0e-52 211.5 316 54.4
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.3e-52 211.1 315 47.0
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 1.3e-52 211.1 330 51.2
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 1.3e-52 211.1 326 48.5
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 1.7e-52 210.7 339 48.1
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 2.3e-52 210.3 318 48.7
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 3.0e-52 209.9 340 49.4
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 6.6e-52 208.8 327 45.9
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 1.1e-51 208.0 501 40.5
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.3e-51 206.5 335 48.4
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 5.6e-51 205.7 327 47.4
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 5.6e-51 205.7 323 48.0
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 7.3e-51 205.3 324 44.1
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 1.2e-50 204.5 322 43.5
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.6e-50 204.1 337 49.6
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 2.1e-50 203.8 339 47.8
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 2.8e-50 203.4 323 41.2
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 3.6e-50 203.0 341 48.1
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.6e-50 203.0 328 49.4
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 3.6e-50 203.0 337 41.8
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 6.2e-50 202.2 301 42.9
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 8.1e-50 201.8 322 43.8
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 3.1e-49 199.9 282 53.9
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 7.6e-48 195.3 335 42.4
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 9.9e-48 194.9 369 39.6
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 3.7e-47 193.0 310 48.4
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 4.6e-45 186.0 322 44.1
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 6.0e-45 185.7 322 41.6
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 1.3e-44 184.5 224 53.1
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 6.6e-44 182.2 334 40.7
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 1.1e-43 181.4 338 47.6
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 2.5e-43 180.3 316 40.5
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 2.5e-43 180.3 332 41.3
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.2e-42 177.9 310 48.1
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 3.6e-42 176.4 423 38.3
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 3.6e-42 176.4 315 43.5
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 4.7e-42 176.0 260 55.4
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 8.1e-42 175.3 260 53.1
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 5.2e-41 172.6 325 40.0
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 6.8e-41 172.2 329 35.9
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 9.9e-40 168.3 343 36.7
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 1.3e-39 167.9 327 36.1
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 1.9e-38 164.1 326 34.4
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 1.9e-38 164.1 326 34.4
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 3.2e-38 163.3 325 39.4
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 5.4e-38 162.5 236 53.4
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 7.8e-37 158.7 339 41.0
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 8.7e-36 155.2 288 39.9
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 1.1e-35 154.8 348 34.8
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.1e-35 154.8 322 34.8
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.5e-35 154.5 289 37.0
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 4.3e-35 152.9 324 42.6
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 5.6e-35 152.5 303 36.0
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 7.3e-35 152.1 333 42.9
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.6e-34 151.0 247 47.4
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 3.1e-33 146.7 299 35.8
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 4.0e-33 146.4 292 37.7
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 2.0e-32 144.1 349 30.7
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 4.4e-32 142.9 285 39.3
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 3.9e-28 129.8 280 36.1
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 5.1e-28 129.4 281 39.9
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 6.6e-28 129.0 347 32.9
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.1e-27 128.3 334 32.6
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.1e-25 121.7 323 31.6
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.8e-25 120.9 325 34.8
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 4.5e-24 116.3 211 36.0
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.9e-22 110.9 186 41.4
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.3e-20 104.8 375 32.3
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.0e-20 103.6 91 62.6
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 5.1e-20 102.8 193 38.9
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 1.8e-17 94.4 226 33.6
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 4.0e-17 93.2 245 37.1
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.6e-16 90.5 114 51.8
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.4e-16 90.1 281 41.6
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 4.5e-16 89.7 98 54.1
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.3e-15 88.2 287 28.6
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 4.2e-14 83.2 103 47.6
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.5e-13 80.1 82 48.8
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 4.6e-13 79.7 89 50.6
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 6.0e-13 79.3 80 53.8
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 1.9e-11 74.3 117 41.9
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 3.3e-11 73.6 96 49.0
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 9.0e-09 65.5 113 38.9
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 3.4e-08 63.5 110 39.1
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 1.7e-07 61.2 308 29.9
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 2.9e-07 60.5 86 44.2
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 6.5e-07 59.3 88 46.6
AagrBONN_evm.TU.Sc2ySwM_368.1809 Anthoceros agrestis HOM05D025852 ORTHO05D031190 7.2e-06 55.8 361 29.6
Ah.07g198550 Amaranthus hybridus HOM05D042025 ORTHO05D006058 9.3e-06 55.5 73 53.4


User provided reference genes

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