Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 0.0e+00 1388.2 752 100.0
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.7e-109 400.6 718 43.0
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 8.0e-106 389.0 701 41.5
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.7e-103 381.3 728 41.1
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 1.1e-99 368.6 719 42.1
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 6.3e-50 203.4 757 30.1
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 3.6e-45 187.6 768 28.6
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 3.3e-43 181.0 760 29.7
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 8.2e-42 176.4 754 28.8
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 2.4e-41 174.9 540 31.7
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 2.6e-40 171.4 732 29.8
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 3.4e-40 171.0 764 29.1
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 3.4e-40 171.0 755 28.7
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 5.9e-40 170.2 309 41.1
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 2.9e-39 167.9 741 29.7
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 3.8e-39 167.5 759 28.6
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 3.8e-39 167.5 283 40.3
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.4e-38 165.6 211 49.3
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 1.4e-38 165.6 328 37.2
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.5e-38 164.9 784 27.4
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 2.5e-38 164.9 314 36.3
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.2e-38 164.5 739 29.8
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 7.2e-38 163.3 258 41.5
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 7.2e-38 163.3 327 38.2
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 1.2e-37 162.5 256 43.0
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 1.6e-37 162.2 599 31.7
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 2.1e-37 161.8 308 37.0
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.1e-37 161.8 655 29.5
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 6.1e-37 160.2 380 39.2
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 7.9e-37 159.8 358 36.9
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.0e-36 157.9 259 43.6
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 5.1e-36 157.1 550 30.4
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 5.1e-36 157.1 212 48.1
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 2.6e-35 154.8 744 31.0
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 3.3e-35 154.5 318 37.1
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 7.4e-35 153.3 524 32.8
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 7.4e-35 153.3 280 41.4
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 3.7e-34 151.0 534 30.3
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 3.7e-34 151.0 340 36.2
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.4e-33 149.1 674 31.2
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.4e-33 149.1 732 26.9
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 1.8e-33 148.7 305 36.7
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 3.1e-33 147.9 254 42.1
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 4.1e-33 147.5 262 42.0
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 7.0e-33 146.7 796 29.5
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 2.0e-32 145.2 763 28.6
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 7.7e-32 143.3 523 30.2
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.7e-31 142.1 673 29.1
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.7e-31 142.1 522 30.7
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 1.7e-31 142.1 469 31.8
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.7e-31 142.1 697 28.4
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 5.0e-31 140.6 687 30.7
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 5.0e-31 140.6 269 37.9
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 5.0e-31 140.6 573 31.6
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 8.5e-31 139.8 752 29.8
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 1.9e-30 138.7 730 27.8
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 2.5e-30 138.3 767 28.9
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 3.2e-30 137.9 475 30.7
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 3.2e-30 137.9 294 35.7
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.5e-30 137.1 699 29.6
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.5e-30 137.1 691 29.8
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 7.2e-30 136.7 252 43.7
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 7.2e-30 136.7 268 38.1
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.2e-29 136.0 261 37.2
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 2.1e-29 135.2 213 43.2
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 2.7e-29 134.8 767 29.5
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 6.1e-29 133.7 818 26.0
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 6.1e-29 133.7 173 49.1
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 8.0e-29 133.3 371 32.9
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 8.0e-29 133.3 766 28.7
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.0e-28 132.9 730 26.3
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 2.3e-28 131.7 292 36.3
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 5.2e-28 130.6 267 36.3
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 8.8e-28 129.8 250 36.4
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 1.5e-27 129.0 347 36.6
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 2.6e-27 128.3 195 41.5
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.3e-26 125.9 676 27.7
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.2e-26 125.2 328 34.1
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 6.3e-26 123.6 628 25.5
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 6.3e-26 123.6 203 41.4
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.1e-25 122.9 269 37.5
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.4e-25 122.5 343 34.1
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 1.8e-25 122.1 270 34.8
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 4.1e-25 120.9 213 39.0
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 7.0e-25 120.2 188 39.9
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 7.0e-25 120.2 263 37.6
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 9.1e-25 119.8 265 35.8
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 9.1e-25 119.8 265 35.8
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 1.2e-24 119.4 188 38.3
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 1.2e-24 119.4 188 38.3
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 2.6e-24 118.2 343 36.2
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 2.6e-24 118.2 734 26.4
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 5.9e-24 117.1 343 35.0
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 5.9e-24 117.1 349 31.8
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.0e-23 116.3 204 41.7
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 3.8e-23 114.4 183 38.3
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 5.0e-23 114.0 189 41.3
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 6.5e-23 113.6 298 33.9
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.1e-22 112.8 713 28.2
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.5e-22 112.5 309 34.0
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 1.9e-22 112.1 328 30.8
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 9.4e-22 109.8 505 28.5
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.2e-21 109.4 186 40.9
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 2.1e-21 108.6 110 50.9
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 3.6e-21 107.8 327 32.7
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.6e-21 107.8 254 35.0
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 8.0e-21 106.7 230 37.0
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 1.0e-20 106.3 265 32.8
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.4e-20 105.9 513 26.9
Ah.07g204390 Amaranthus hybridus HOM05D003739 ORTHO05D003996 8.8e-20 103.2 466 28.5
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.2e-19 102.8 817 23.9
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 2.0e-19 102.1 465 28.4
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 2.6e-19 101.7 156 41.7
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 3.4e-19 101.3 266 31.6
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 3.4e-19 101.3 179 37.4
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 9.8e-19 99.8 471 27.8
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 2.2e-18 98.6 268 31.0
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 2.2e-18 98.6 344 30.8
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 4.8e-18 97.4 277 30.7
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 8.3e-18 96.7 265 29.8
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.1e-17 96.3 227 36.1
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 4.1e-17 94.4 135 45.9
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 7.0e-17 93.6 94 52.1
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 2.7e-16 91.7 642 25.5
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 4.5e-16 90.9 112 42.0
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.7e-15 89.0 547 26.9
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 7.2e-14 83.6 172 35.5
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 6.1e-13 80.5 178 32.6
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 4.0e-12 77.8 727 26.1
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.2e-11 76.3 498 27.5
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.5e-11 75.9 61 62.3
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 3.4e-11 74.7 105 41.0
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 4.4e-11 74.3 743 24.8
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.5e-11 73.6 96 43.8
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.5e-11 73.6 96 43.8
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.7e-10 72.4 85 45.9
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.8e-10 71.6 157 38.9
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.4e-09 68.6 247 29.1
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.4e-09 68.6 500 26.4
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.1e-09 68.2 389 27.8
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 7.0e-09 67.0 132 34.1
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 2.7e-08 65.1 112 33.9
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.5e-08 64.7 278 27.3
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 5.9e-08 63.9 377 29.2
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 7.7e-08 63.5 641 24.0
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 2.3e-07 62.0 304 26.6
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 2.3e-07 62.0 107 40.2
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 2.3e-07 62.0 59 55.9
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 2.9e-07 61.6 620 25.0
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 5.0e-07 60.8 127 33.9
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 8.6e-07 60.1 207 30.9
HPP92_008918 Vanilla planifolia HOM05D003739 ORTHO05D003996 2.5e-06 58.5 121 34.7
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 4.2e-06 57.8 97 39.2
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 7.2e-06 57.0 99 36.4
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 9.5e-06 56.6 156 36.5


User provided reference genes

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