Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 2889.0 1422 100.0
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1707.6 1373 63.0
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1707.2 1347 64.4
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1336.6 1384 52.0
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1330.9 1429 50.8
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1328.5 1376 51.9
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1299.6 1389 50.7
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1297.3 1389 50.5
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1295.8 1435 49.6
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1291.9 1382 50.7
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1291.2 1390 50.6
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1291.2 1350 51.9
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1290.0 1389 50.3
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1282.7 1390 50.0
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1269.6 1370 50.9
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1265.8 1383 50.5
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1262.3 1393 49.3
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1260.0 1383 49.9
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1258.4 1375 50.5
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1253.4 1380 50.1
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1252.7 1398 50.6
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1249.6 1374 49.9
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1247.3 1392 49.7
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1243.4 1381 50.1
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1240.3 1378 49.5
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1237.2 1479 47.3
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1230.7 1391 48.4
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1229.9 1079 59.4
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1223.4 1390 47.6
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1211.1 1374 49.1
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1206.4 1439 46.7
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1206.0 1343 49.7
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1204.5 1387 47.8
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1200.3 1377 47.9
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1198.7 1384 47.2
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1198.3 1372 48.3
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1197.6 1370 48.0
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1196.8 1362 48.3
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1196.4 1369 48.6
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1196.4 1386 48.6
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1196.0 1369 48.1
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1194.5 1389 48.2
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1193.7 1393 48.6
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1192.2 1379 48.1
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1191.8 1367 47.5
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1191.4 1375 48.3
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1191.0 1369 47.8
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1191.0 1372 47.9
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1186.8 1383 47.4
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1184.9 1368 46.9
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1182.5 1387 47.7
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1181.8 1389 46.9
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1181.4 1368 47.8
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1181.4 1410 47.7
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1180.6 1368 47.8
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1179.1 1369 47.8
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1177.2 1373 46.8
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1176.4 1389 46.8
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1173.7 1365 47.3
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1169.1 1372 46.9
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1168.7 1389 47.6
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1166.8 1391 47.2
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1149.4 1406 46.3
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1148.7 1366 47.0
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1146.7 1362 47.0
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1145.2 1167 52.4
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1141.3 1473 45.1
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1138.3 1388 46.5
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1121.7 1384 46.7
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1109.7 1384 46.3
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1103.2 1331 47.2
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1102.8 1353 46.0
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1098.2 1453 44.7
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1095.1 1140 51.9
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1081.2 1335 46.0
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 8.8e-311 1070.8 1154 51.6
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 1.8e-308 1063.1 1395 43.4
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 9.9e-307 1057.4 1362 44.9
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 6.7e-303 1044.6 1389 43.6
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 5.3e-284 981.9 987 52.7
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 2.0e-283 979.9 1387 41.7
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 2.2e-282 976.5 987 52.5
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 1.0e-279 967.6 1362 41.9
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 7.4e-278 961.4 1048 49.0
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 2.2e-277 959.9 1036 51.8
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 4.1e-276 955.7 1033 51.7
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 1.6e-243 847.4 812 58.3
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 2.9e-237 826.6 928 49.8
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 3.4e-222 776.5 733 53.3
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 6.0e-211 739.2 1381 36.1
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 3.4e-206 723.4 1418 35.6
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 1.9e-196 691.0 1485 33.4
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 4.8e-192 676.4 865 47.7
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 1.8e-183 647.9 1468 32.2
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 4.8e-176 623.2 600 51.7
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 5.0e-173 613.2 611 52.9
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 8.2e-168 595.9 1330 32.6
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 2.7e-163 580.9 604 50.5
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 2.6e-158 564.3 600 48.8
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 2.3e-154 551.2 751 45.4
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 4.0e-146 523.9 1354 30.3
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 2.4e-143 514.6 781 41.4
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.9e-140 505.0 782 39.9
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.2e-126 459.1 635 43.5
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 5.0e-125 453.8 599 45.1
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.2e-119 434.5 854 37.6
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 6.0e-94 350.5 427 45.7
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 2.4e-90 338.6 313 55.9
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-87 328.6 361 47.4
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 1.0e-72 280.0 492 37.6
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.1e-66 258.5 304 43.8
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 6.5e-64 250.8 339 41.3
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 2.2e-56 225.7 1609 22.1
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 5.0e-56 224.6 202 51.5
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.3e-53 215.7 299 38.5
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 2.5e-52 212.2 258 51.2
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 4.3e-52 211.5 260 43.5
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 1.4e-50 206.5 264 47.0
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 5.0e-48 198.0 205 46.8
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 6.5e-48 197.6 185 50.3
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 1.4e-45 189.9 240 48.8
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 3.8e-40 171.8 1312 22.0
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 6.5e-40 171.0 177 46.3
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 5.5e-39 167.9 212 46.2
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-30 138.3 450 26.9
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 4.7e-30 138.3 172 46.5
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 8.0e-30 137.5 154 41.6
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 2.4e-26 125.9 73 84.9
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 3.1e-26 125.6 109 50.5
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 6.5e-24 117.9 162 43.8
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 1.2e-22 113.6 250 34.4
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 1.8e-21 109.8 73 65.8
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 1.7e-19 103.2 70 67.1
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 9.2e-18 97.4 114 42.1
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 4.5e-17 95.1 125 44.0
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 7.7e-17 94.4 157 40.8
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 3.8e-16 92.0 86 51.2
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 1.5e-15 90.1 84 56.0
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.5e-12 80.1 58 60.3
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.0e-12 79.7 59 64.4
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.0e-12 79.7 59 64.4
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 2.2e-11 76.3 52 61.5
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.9e-11 75.9 59 62.7
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 6.4e-11 74.7 56 66.1
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.8e-10 73.2 124 37.1
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 1.8e-10 73.2 98 42.9
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 5.4e-10 71.6 65 52.3
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 5.4e-10 71.6 54 68.5
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-09 69.7 437 24.0
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 1.7e-08 66.6 50 60.0
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 5.0e-08 65.1 47 63.8
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 1.9e-07 63.2 43 67.4


User provided reference genes

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