Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 1.6e-274 948.7 443 100.0
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 7.1e-187 657.5 362 83.7
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 2.0e-181 639.4 358 82.1
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 3.8e-180 635.2 362 80.4
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 4.2e-179 631.7 362 80.1
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 3.6e-178 628.6 398 73.6
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 2.2e-172 609.4 360 76.4
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.6e-157 559.3 347 72.9
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 8.5e-156 554.3 360 69.7
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.1e-155 553.9 364 69.8
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 2.5e-155 552.7 364 67.6
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.2e-154 550.4 347 71.8
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.1e-154 549.7 347 71.8
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 1.4e-153 547.0 369 70.5
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.8e-153 546.6 359 68.8
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.5e-152 543.5 358 68.7
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.5e-152 543.5 345 71.3
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 4.4e-152 542.0 364 67.9
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 7.5e-152 541.2 365 69.0
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 2.2e-151 539.7 363 68.9
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 3.7e-151 538.9 365 68.5
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.1e-150 537.3 365 68.2
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 1.4e-150 537.0 362 67.4
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.4e-150 537.0 358 69.3
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.4e-150 537.0 358 69.3
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.8e-150 536.6 356 68.0
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 1.8e-150 536.6 347 69.7
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 7.0e-150 534.6 370 66.8
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 9.1e-150 534.3 347 70.0
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.2e-149 533.9 344 69.5
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 4.5e-149 531.9 357 67.2
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.5e-149 531.9 358 68.7
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 7.7e-149 531.2 354 67.2
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 1.0e-148 530.8 348 68.7
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 1.7e-148 530.0 347 69.7
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 2.9e-148 529.3 364 65.4
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 2.9e-148 529.3 358 67.6
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 2.9e-148 529.3 358 69.0
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 3.8e-148 528.9 360 67.2
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 5.0e-148 528.5 360 67.5
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 8.5e-148 527.7 336 71.1
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 2.5e-147 526.2 368 65.2
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 9.4e-147 524.2 364 65.7
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 3.0e-145 519.2 345 68.7
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 4.0e-145 518.8 348 67.2
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 6.8e-145 518.1 344 67.7
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 6.8e-145 518.1 355 67.0
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.5e-144 516.9 352 66.5
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 3.4e-144 515.8 348 67.0
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 5.7e-144 515.0 364 64.8
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 5.7e-144 515.0 348 66.4
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 5.7e-144 515.0 363 65.0
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 7.5e-144 514.6 363 65.0
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 9.8e-144 514.2 365 65.5
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 9.8e-144 514.2 350 66.6
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 9.8e-144 514.2 359 66.0
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.3e-143 513.8 364 65.1
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.8e-143 512.7 364 63.7
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 3.7e-143 512.3 348 66.7
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 3.7e-143 512.3 367 64.9
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 3.7e-143 512.3 363 64.5
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 3.7e-143 512.3 364 63.5
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 4.8e-143 511.9 357 66.7
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.1e-142 510.8 332 69.6
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.8e-142 510.0 347 66.6
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 1.8e-142 510.0 359 64.6
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 5.4e-142 508.4 364 63.2
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 7.0e-142 508.1 351 66.1
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 9.1e-142 507.7 361 65.4
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.6e-141 506.9 321 70.1
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 2.0e-141 506.5 321 70.1
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 2.7e-141 506.1 321 70.1
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 3.5e-141 505.8 321 70.1
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 7.7e-141 504.6 346 66.2
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 7.7e-141 504.6 345 64.3
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 1.3e-140 503.8 362 63.3
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.7e-140 503.4 354 64.7
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 2.9e-140 502.7 319 72.1
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 5.0e-140 501.9 348 64.7
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 6.6e-140 501.5 354 64.1
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.9e-139 500.0 294 73.5
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 4.2e-139 498.8 347 64.6
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.2e-139 498.8 351 63.2
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 5.5e-139 498.4 345 66.1
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 4.7e-138 495.4 359 63.0
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 5.2e-137 491.9 362 62.2
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 8.9e-137 491.1 452 52.4
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 1.5e-136 490.3 341 64.5
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 4.4e-136 488.8 451 52.5
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 7.5e-136 488.0 359 60.7
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 7.5e-136 488.0 357 61.1
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 9.8e-136 487.6 365 62.2
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 1.7e-135 486.9 343 63.0
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 1.7e-135 486.9 343 63.0
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 2.8e-135 486.1 357 61.1
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.4e-134 483.8 343 62.7
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.4e-134 483.8 374 63.1
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 2.4e-134 483.0 343 63.3
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 4.1e-134 482.3 347 61.1
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 9.2e-134 481.1 356 63.8
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 4.5e-133 478.8 356 62.9
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.7e-132 476.9 337 66.8
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 2.9e-132 476.1 342 62.3
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 1.5e-131 473.8 358 62.6
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 5.6e-131 471.9 338 64.8
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 1.0e-129 467.6 354 60.5
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 3.4e-128 462.6 422 53.6
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 9.8e-120 434.5 317 63.1
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.2e-117 427.6 362 57.5
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-117 427.6 278 68.3
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 2.7e-117 426.4 278 68.0
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 2.3e-116 423.3 278 67.6
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 1.9e-110 403.7 267 68.5
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.1e-110 402.5 270 66.7
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 5.4e-110 402.1 265 69.1
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.0e-108 396.4 340 54.7
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 6.4e-103 378.6 288 59.0
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.9e-99 367.1 323 57.0
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.0e-97 359.4 223 72.2
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 5.3e-97 359.0 233 67.8
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 6.4e-95 352.1 245 67.3
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 5.4e-94 349.0 349 47.9
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 7.6e-88 328.6 210 71.0
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.9e-87 326.6 337 49.9
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 7.1e-86 322.0 363 45.7
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.6e-85 320.9 357 45.4
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 2.7e-85 320.1 266 56.4
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 1.5e-83 314.3 236 60.6
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.9e-83 313.9 329 46.8
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 3.1e-81 306.6 201 68.2
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.4e-78 297.7 303 48.2
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.9e-76 289.7 199 67.3
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.1e-73 280.0 199 65.3
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.0e-72 277.3 184 70.7
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 1.1e-70 271.6 189 64.0
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.9e-56 222.6 157 64.3
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 2.5e-54 217.2 226 49.6
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 4.7e-53 213.0 161 61.5
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 7.0e-49 199.1 147 63.3
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.4e-41 174.9 221 43.9
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 6.5e-31 139.4 107 61.7
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.2e-30 137.1 103 65.0
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 4.4e-27 126.7 105 54.3
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 1.5e-22 111.7 101 54.5
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.3e-22 110.5 100 49.0
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.5e-11 75.1 111 31.5
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 6.6e-07 59.7 46 58.7


User provided reference genes

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