Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 6.0e-49 197.2 100 100.0
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 7.5e-44 180.3 131 74.8
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 5.4e-42 174.1 131 71.8
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 3.9e-40 167.9 129 69.8
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 5.1e-40 167.5 129 69.0
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 5.1e-40 167.5 129 69.8
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 6.6e-40 167.2 129 70.5
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 6.6e-40 167.2 129 70.5
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 6.6e-40 167.2 129 69.8
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 1.1e-39 166.4 129 69.8
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.5e-39 166.0 129 69.0
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.5e-39 166.0 129 69.0
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 1.5e-39 166.0 131 67.9
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.9e-39 165.6 129 69.0
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.9e-39 165.6 129 69.0
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 2.5e-39 165.2 129 69.0
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 2.5e-39 165.2 129 69.0
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 3.3e-39 164.9 132 70.5
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 3.3e-39 164.9 129 67.4
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.3e-39 164.5 129 68.2
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 4.3e-39 164.5 129 68.2
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 4.3e-39 164.5 129 67.4
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 4.3e-39 164.5 129 67.4
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 4.3e-39 164.5 129 68.2
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 4.3e-39 164.5 129 68.2
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 5.6e-39 164.1 129 68.2
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 5.6e-39 164.1 129 68.2
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 5.6e-39 164.1 129 68.2
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 5.6e-39 164.1 129 68.2
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 5.6e-39 164.1 129 68.2
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 5.6e-39 164.1 129 68.2
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 5.6e-39 164.1 129 68.2
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 5.6e-39 164.1 129 68.2
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 9.5e-39 163.3 131 68.7
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 9.5e-39 163.3 131 68.7
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 9.5e-39 163.3 129 68.2
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 1.2e-38 162.9 129 68.2
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 1.2e-38 162.9 129 67.4
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 1.2e-38 162.9 129 67.4
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 1.2e-38 162.9 129 67.4
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 1.2e-38 162.9 129 67.4
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 1.2e-38 162.9 129 67.4
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 1.2e-38 162.9 129 68.2
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 1.2e-38 162.9 129 68.2
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 1.6e-38 162.5 129 68.2
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 1.6e-38 162.5 129 68.2
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.6e-38 162.5 107 79.4
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 1.6e-38 162.5 129 67.4
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 2.1e-38 162.2 129 66.7
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.1e-38 162.2 129 67.4
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 2.8e-38 161.8 129 66.7
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 2.8e-38 161.8 129 69.0
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 2.8e-38 161.8 129 67.4
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 2.8e-38 161.8 129 67.4
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.6e-38 161.4 129 68.2
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 3.6e-38 161.4 129 65.9
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 3.6e-38 161.4 129 67.4
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 3.6e-38 161.4 129 65.9
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 3.6e-38 161.4 129 67.4
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 3.6e-38 161.4 129 66.7
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 4.7e-38 161.0 129 66.7
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 4.7e-38 161.0 129 67.4
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 6.2e-38 160.6 131 66.4
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 6.2e-38 160.6 129 67.4
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 6.2e-38 160.6 129 68.2
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 6.2e-38 160.6 129 66.7
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 8.1e-38 160.2 129 67.4
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 8.1e-38 160.2 129 67.4
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 8.1e-38 160.2 129 67.4
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 1.1e-37 159.8 129 68.2
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 1.1e-37 159.8 129 64.3
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 1.4e-37 159.5 129 67.4
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 1.4e-37 159.5 129 66.7
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 1.8e-37 159.1 123 69.9
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 1.8e-37 159.1 129 65.9
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.8e-37 159.1 131 66.4
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.4e-37 158.7 131 65.6
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 2.4e-37 158.7 129 65.1
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 3.1e-37 158.3 129 65.1
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 3.1e-37 158.3 129 65.9
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 3.1e-37 158.3 129 66.7
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 4.0e-37 157.9 129 65.9
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 4.0e-37 157.9 129 66.7
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 4.0e-37 157.9 129 66.7
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 4.0e-37 157.9 129 65.9
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 4.0e-37 157.9 129 65.9
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 5.2e-37 157.5 126 66.7
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 6.8e-37 157.1 131 64.9
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 6.8e-37 157.1 129 63.6
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 6.8e-37 157.1 129 65.1
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 1.2e-36 156.4 129 65.9
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 1.5e-36 156.0 129 65.1
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 1.5e-36 156.0 129 65.9
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.5e-36 156.0 131 64.1
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 1.5e-36 156.0 129 65.9
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 2.0e-36 155.6 129 65.1
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.9
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.9
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.1
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.1
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.1
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.1
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.1
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.1
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.1
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.1
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.1
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.1
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.9
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.1
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 2.6e-36 155.2 129 65.9
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 2.6e-36 155.2 129 66.7
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 2.6e-36 155.2 126 65.1
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 2.6e-36 155.2 129 65.1
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 3.4e-36 154.8 129 65.9
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 3.4e-36 154.8 129 64.3
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 4.4e-36 154.5 129 65.1
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 4.4e-36 154.5 129 65.1
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 4.4e-36 154.5 129 65.1
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 5.8e-36 154.1 129 64.3
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 5.8e-36 154.1 129 65.9
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 7.6e-36 153.7 129 65.1
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 1.7e-35 152.5 129 64.3
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 1.7e-35 152.5 129 62.8
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 1.1e-34 149.8 129 63.6
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 1.9e-34 149.1 129 62.8
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.4e-34 148.7 129 64.3
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 2.4e-34 148.7 129 63.6
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 2.4e-34 148.7 129 63.6
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 3.2e-34 148.3 133 61.7
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 3.5e-33 144.8 98 76.5
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 3.5e-33 144.8 98 76.5
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 6.0e-33 144.1 129 61.2
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 7.8e-33 143.7 139 58.3
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 1.7e-32 142.5 129 61.2
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 2.3e-32 142.1 139 57.6
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 3.9e-32 141.4 113 68.1
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 5.1e-32 141.0 115 64.3
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 8.7e-32 140.2 113 66.4
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 8.7e-32 140.2 113 66.4
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 1.1e-31 139.8 113 66.4
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 1.5e-31 139.4 158 53.8
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 4.8e-30 134.4 109 66.1
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 1.1e-29 133.3 108 66.7
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.1e-29 133.3 114 62.3
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 1.4e-29 132.9 154 53.9
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 1.4e-29 132.9 113 64.6
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 1.8e-29 132.5 122 57.4
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 2.4e-29 132.1 123 56.1
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 3.1e-29 131.7 118 57.6
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 6.9e-29 130.6 120 60.0
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.2e-28 129.8 117 59.8
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 7.6e-28 127.1 123 54.5
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 4.2e-26 121.3 123 51.2
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 4.2e-26 121.3 98 68.4
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.1e-26 120.6 104 60.6
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.2e-25 119.8 105 61.0
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.2e-25 119.8 105 61.0
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.2e-25 119.8 102 61.8
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 3.5e-25 118.2 100 63.0
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.9e-23 112.5 102 58.8
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 3.3e-23 111.7 98 60.2
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 4.3e-23 111.3 55 100.0
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 1.1e-21 106.7 116 50.0
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.8e-21 105.9 55 92.7
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 5.3e-21 104.4 53 92.5
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 6.9e-21 104.0 53 94.3
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 2.6e-20 102.1 53 92.5
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 4.5e-20 101.3 108 49.1
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 9.9e-20 100.1 50 96.0
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 9.9e-20 100.1 50 96.0
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 2.2e-19 99.0 114 43.9
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 4.9e-19 97.8 49 93.9
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 1.1e-18 96.7 53 84.9
AUR62011951 Chenopodium quinoa HOM05D003908 ORTHO05D004488 7.9e-17 90.5 49 85.7
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 8.1e-14 80.5 46 84.8
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 8.1e-14 80.5 50 76.0
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 9.0e-13 77.0 128 38.3
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.2e-12 76.6 38 92.1
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 1.5e-12 76.3 46 80.4
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 6.5e-11 70.9 35 91.4
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.1e-10 70.1 35 88.6
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 4.2e-10 68.2 86 48.8


User provided reference genes

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