Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 0.0e+00 1673.7 867 100.0
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 8.0e-150 535.4 921 42.8
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 2.6e-148 530.4 915 41.2
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 1.1e-143 515.0 916 40.6
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 7.6e-124 449.1 910 38.7
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 2.4e-114 417.5 916 35.8
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 7.4e-103 379.4 891 36.1
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 1.3e-102 378.6 894 35.7
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 4.5e-76 290.4 931 29.8
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 8.5e-75 286.2 982 30.3
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 2.5e-74 284.6 929 29.9
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 2.7e-73 281.2 939 28.6
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 3.4e-68 264.2 942 28.2
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 3.2e-66 257.7 932 29.6
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 1.2e-65 255.8 930 28.1
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.0e-64 252.7 937 28.2
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 1.1e-63 249.2 935 29.2
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 5.7e-63 246.9 932 29.0
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 7.4e-63 246.5 776 29.1
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 2.8e-62 244.6 945 28.4
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 8.2e-62 243.0 925 28.9
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 2.4e-61 241.5 908 28.6
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 2.0e-60 238.4 945 29.1
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 1.9e-58 231.9 889 28.6
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 3.2e-58 231.1 931 27.2
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 7.2e-58 229.9 941 27.6
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 4.7e-57 227.3 1027 26.7
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 8.8e-56 223.0 930 27.6
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.5e-55 222.2 913 26.7
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 3.3e-55 221.1 926 26.6
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 5.7e-55 220.3 886 27.4
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 9.7e-55 219.5 931 28.7
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 1.3e-54 219.2 947 27.7
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 1.7e-54 218.8 922 27.5
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 8.2e-54 216.5 939 25.8
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 4.1e-53 214.2 959 26.3
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 5.3e-53 213.8 940 25.6
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 1.2e-52 212.6 902 26.1
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 3.5e-52 211.1 921 28.2
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 5.9e-52 210.3 895 28.5
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 1.3e-51 209.1 901 27.5
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.5e-50 204.9 935 26.1
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.5e-50 204.9 940 25.4
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.2e-50 204.5 896 28.0
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 3.2e-50 204.5 913 26.4
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 7.2e-50 203.4 933 26.4
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 9.4e-50 203.0 917 26.5
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 9.4e-50 203.0 917 28.9
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 2.7e-49 201.4 928 27.5
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 6.1e-49 200.3 913 27.3
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 8.0e-49 199.9 942 27.5
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 1.0e-48 199.5 920 27.3
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 1.4e-48 199.1 916 27.0
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 1.4e-48 199.1 975 27.7
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 1.8e-48 198.7 962 25.5
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 3.0e-48 198.0 971 25.0
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 4.0e-48 197.6 903 28.2
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 4.0e-48 197.6 896 27.0
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 1.2e-47 196.1 995 25.6
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 7.5e-47 193.4 950 27.2
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 7.5e-47 193.4 898 26.7
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 1.7e-46 192.2 917 27.3
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 3.7e-46 191.0 946 27.9
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 3.7e-46 191.0 593 31.4
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 5.4e-45 187.2 980 25.1
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 1.2e-44 186.0 911 27.7
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 5.9e-44 183.7 942 25.5
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 5.0e-43 180.6 1107 24.4
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 3.2e-42 177.9 948 25.2
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 3.2e-42 177.9 931 26.0
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.7e-41 174.9 909 25.6
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 8.0e-41 173.3 900 25.6
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 8.8e-40 169.9 911 25.2
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.2e-39 169.5 1079 24.5
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 1.3e-38 166.0 929 25.1
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 1.7e-38 165.6 907 25.9
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 2.8e-38 164.9 894 26.2
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 1.1e-37 162.9 902 25.2
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 7.7e-36 156.8 892 25.1
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 7.7e-36 156.8 890 25.7
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 1.0e-35 156.4 372 35.2
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 1.3e-35 156.0 894 25.8
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 1.1e-34 152.9 846 24.0
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.5e-34 152.5 963 25.1
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 2.8e-33 148.3 927 24.5
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.8e-32 145.6 914 24.5
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 1.8e-32 145.6 892 24.1
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 5.2e-32 144.1 791 26.7
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 8.9e-32 143.3 317 36.9
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 2.6e-31 141.7 595 27.7
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 8.3e-30 136.7 788 24.9
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 4.1e-29 134.4 904 24.4
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 1.6e-25 122.5 898 23.3
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 4.7e-25 120.9 914 23.3
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.0e-24 119.8 170 41.2
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 2.6e-23 115.2 724 23.1
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 3.2e-21 108.2 391 30.2
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 3.2e-21 108.2 381 29.1
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 4.1e-21 107.8 664 23.6
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 7.0e-21 107.1 350 31.7
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 9.2e-21 106.7 386 29.3
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 9.2e-21 106.7 636 24.7
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 1.3e-19 102.8 896 22.8
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 3.0e-19 101.7 902 23.5
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.0e-19 101.7 179 34.1
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 5.0e-19 100.9 907 21.7
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 8.6e-19 100.1 891 21.2
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 2.5e-18 98.6 165 35.2
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 3.3e-18 98.2 915 22.8
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 7.3e-18 97.1 202 34.2
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 2.8e-17 95.1 892 22.4
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 3.6e-17 94.7 892 22.3
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 6.8e-16 90.5 168 35.7
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 1.5e-15 89.4 281 30.2
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 2.0e-15 89.0 893 21.4
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 2.0e-15 89.0 384 28.1
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 1.7e-14 85.9 906 21.7
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 8.3e-14 83.6 175 32.0
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 5.4e-13 80.9 930 21.4
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 7.1e-13 80.5 900 20.9
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 2.7e-12 78.6 906 21.7
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 2.7e-12 78.6 148 39.9
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 4.6e-12 77.8 177 28.2
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 3.0e-11 75.1 906 21.3
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 3.0e-11 75.1 895 21.2
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 5.1e-11 74.3 906 21.5
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 1.1e-10 73.2 210 28.6
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 1.1e-10 73.2 171 29.2
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 1.5e-10 72.8 521 24.0
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 2.5e-10 72.0 903 21.3
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 2.5e-10 72.0 178 27.0
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.3e-10 71.6 287 30.3
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 4.3e-10 71.2 164 29.9
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.6e-10 70.9 164 29.9
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 5.6e-10 70.9 164 29.9
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 1.2e-09 69.7 279 27.6
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.2e-09 69.7 167 28.1
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 2.1e-09 68.9 164 28.0
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 2.8e-09 68.6 317 27.4
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 3.6e-09 68.2 214 28.0
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 3.6e-09 68.2 169 28.4
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 1.8e-08 65.9 898 22.2
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 2.3e-08 65.5 168 26.2
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 4.0e-08 64.7 168 28.0
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 5.2e-08 64.3 167 29.3
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 1.2e-07 63.2 898 20.8
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 1.2e-07 63.2 168 28.0
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.5e-07 62.8 169 29.0
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 2.0e-07 62.4 979 21.6
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 2.0e-07 62.4 194 28.9
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 2.0e-07 62.4 253 28.1
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 2.6e-07 62.0 172 30.8
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 3.4e-07 61.6 171 30.4
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 3.4e-07 61.6 167 25.1
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 5.8e-07 60.8 175 26.9
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 5.8e-07 60.8 179 29.1
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 7.6e-07 60.5 175 26.9
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 7.6e-07 60.5 889 20.0
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 9.9e-07 60.1 884 19.6
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 9.9e-07 60.1 169 29.0
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 1.3e-06 59.7 173 29.5
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 2.9e-06 58.5 176 25.6
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 4.9e-06 57.8 183 27.3
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 8.4e-06 57.0 180 27.2
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 8.4e-06 57.0 827 20.6


User provided reference genes

Program Settings