Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 0.0e+00 1319.7 674 100.0
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 2.9e-296 1021.5 609 85.2
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.5e-292 1009.2 611 83.8
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 1.2e-291 1006.1 637 81.5
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 8.1e-291 1003.4 610 84.1
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 4.4e-289 997.7 611 82.5
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 1.4e-287 992.6 611 82.0
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 2.4e-287 991.9 611 82.2
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 6.0e-286 987.3 611 82.3
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 7.8e-286 986.9 610 82.0
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 1.7e-285 985.7 610 81.5
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 2.3e-285 985.3 632 79.9
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 3.0e-285 984.9 611 82.5
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 5.1e-285 984.2 611 81.5
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 1.1e-284 983.0 609 80.8
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 3.3e-284 981.5 611 80.7
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 5.6e-284 980.7 611 80.7
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 9.6e-284 979.9 611 80.9
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 3.6e-283 978.0 610 80.7
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 3.6e-283 978.0 610 80.5
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 6.2e-283 977.2 611 81.0
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 3.1e-282 974.9 611 80.2
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 4.0e-282 974.5 610 80.2
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 9.0e-282 973.4 610 80.3
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 1.7e-280 969.1 611 79.9
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.4e-279 966.1 610 79.5
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 2.4e-279 965.3 611 81.3
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 2.4e-279 965.3 610 79.8
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 7.1e-279 963.8 611 79.9
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 9.3e-279 963.4 611 79.4
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 2.7e-278 961.8 610 79.7
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 4.6e-278 961.1 610 79.5
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.3e-277 959.5 649 76.6
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 3.0e-277 958.4 611 79.9
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.9e-277 958.0 620 78.4
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 4.3e-276 954.5 610 79.2
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 9.6e-276 953.4 610 78.9
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.1e-275 952.2 611 78.7
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.8e-275 951.0 621 77.6
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 9.0e-274 946.8 610 78.4
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 1.2e-273 946.4 614 77.9
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.3e-272 943.0 626 78.9
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 2.2e-272 942.2 611 78.1
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 4.2e-271 937.9 611 77.4
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 2.1e-270 935.6 611 76.9
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 3.5e-270 934.9 611 76.9
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 4.6e-270 934.5 618 76.2
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.0e-269 933.3 746 67.6
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 6.7e-269 930.6 677 72.5
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 8.7e-269 930.2 610 76.4
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 1.5e-268 929.5 609 77.0
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.5e-268 929.5 609 77.0
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.9e-268 929.1 610 79.3
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 1.9e-268 929.1 608 76.3
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 2.5e-268 928.7 610 76.9
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 2.5e-268 928.7 608 76.3
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 4.3e-268 927.9 609 76.8
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 5.6e-268 927.5 617 76.7
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 1.3e-267 926.4 617 76.5
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 2.8e-267 925.2 618 76.2
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 6.2e-267 924.1 618 75.9
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 2.4e-266 922.2 618 75.9
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 1.2e-265 919.8 617 76.0
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 1.2e-265 919.8 616 75.6
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 3.4e-265 918.3 617 75.9
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.9e-263 912.5 610 74.9
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 7.1e-263 910.6 610 74.6
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 1.0e-261 906.7 651 72.5
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 3.9e-261 904.8 608 74.7
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 8.7e-261 903.7 624 73.2
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 4.3e-260 901.4 611 75.0
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 5.6e-260 901.0 616 74.4
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 2.6e-257 892.1 610 73.6
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 3.8e-256 888.3 574 78.6
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 6.5e-256 887.5 618 73.6
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 1.1e-255 886.7 611 73.6
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 5.5e-255 884.4 610 73.9
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 6.0e-254 880.9 611 72.2
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 7.9e-254 880.6 610 73.3
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 1.9e-252 875.9 610 73.4
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 3.3e-252 875.2 542 81.2
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 2.8e-251 872.1 599 73.5
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.1e-247 860.1 639 69.8
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.9e-247 859.4 601 72.5
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 5.5e-247 857.8 611 70.5
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.1e-244 850.1 574 75.6
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 5.9e-241 837.8 585 73.3
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 8.8e-237 823.9 516 80.2
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 4.1e-234 815.1 516 79.1
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 6.5e-232 807.7 610 68.7
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 6.5e-232 807.7 468 87.4
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 3.6e-230 802.0 616 68.5
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.0e-229 800.4 612 65.4
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 1.1e-226 790.4 506 79.4
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 1.0e-208 730.7 612 58.2
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 1.3e-208 730.3 552 70.3
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 3.8e-208 728.8 439 83.4
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 9.2e-202 707.6 555 67.7
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 5.0e-200 701.8 613 57.4
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 7.0e-186 654.8 610 55.7
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 2.4e-173 613.2 642 49.7
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 1.1e-167 594.3 352 85.2
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 4.5e-156 555.8 335 84.8
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 7.6e-156 555.1 360 79.4
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.2e-155 553.5 610 48.2
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 5.3e-149 532.3 481 61.5
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.5e-148 530.8 610 46.4
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.4e-146 524.2 381 72.7
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 1.1e-133 481.5 364 65.9
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 2.1e-121 440.7 604 43.7
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 3.9e-120 436.4 506 44.7
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 3.1e-109 400.2 277 76.2
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 3.5e-108 396.7 372 61.0
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 5.3e-101 372.9 451 51.0
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 3.4e-71 273.9 175 78.9
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 9.2e-69 265.8 171 77.8
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.1e-65 254.6 186 66.1
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.1e-58 232.3 137 85.4
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.6e-57 228.4 134 82.1
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 7.6e-55 219.5 145 77.2
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 9.0e-48 196.1 117 82.1
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 3.5e-44 184.1 122 77.0
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 6.0e-44 183.3 140 65.0
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 7.3e-42 176.4 149 63.1
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 2.8e-41 174.5 105 76.2
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 7.6e-39 166.4 106 75.5
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.6e-36 158.7 98 80.6
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 9.0e-32 142.9 178 47.8
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 2.0e-31 141.7 138 60.9
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 1.4e-29 135.6 81 84.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.6e-23 114.8 67 80.6
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.3e-22 112.5 82 72.0
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 2.5e-21 108.2 107 48.6
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 6.1e-20 103.6 59 76.3
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 6.1e-20 103.6 59 76.3
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 5.1e-19 100.5 130 53.1
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 4.3e-18 97.4 54 83.3
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 6.3e-17 93.6 58 74.1
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.8e-16 92.0 76 61.8
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.2e-15 89.4 59 67.8
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.2e-15 89.4 59 67.8
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 2.9e-14 84.7 56 67.9
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 8.5e-14 83.2 50 74.0
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 7.9e-12 76.6 80 51.2
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.8e-11 75.5 48 81.2
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 3.1e-08 64.7 38 71.1
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 4.1e-08 64.3 63 52.4
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 1.7e-06 58.9 51 51.0
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 3.8e-06 57.8 86 43.0
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 6.5e-06 57.0 34 79.4
Hma1.2p1_0484F.1_g162800 Hydrangea macrophylla HOM05D004954 ORTHO05D008776 8.5e-06 56.6 33 81.8


User provided reference genes

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