Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 1.1e-108 396.7 205 100.0
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 4.3e-86 321.6 205 81.0
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 2.8e-85 318.9 191 85.9
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 1.4e-84 316.6 206 81.6
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 2.4e-84 315.8 191 85.3
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 5.3e-84 314.7 206 80.1
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 6.9e-84 314.3 205 82.0
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 2.6e-83 312.4 205 80.0
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 7.6e-83 310.8 206 79.6
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 7.6e-83 310.8 206 79.1
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 2.2e-82 309.3 205 79.5
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 3.8e-82 308.5 204 79.9
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 6.4e-82 307.8 229 72.9
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 8.4e-82 307.4 205 77.1
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 1.1e-81 307.0 205 78.5
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 1.9e-81 306.2 205 76.6
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 1.9e-81 306.2 205 77.1
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 2.4e-81 305.8 205 78.5
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 2.4e-81 305.8 205 78.5
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 5.4e-81 304.7 205 78.0
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 9.3e-81 303.9 205 77.6
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 9.3e-81 303.9 205 77.6
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 9.3e-81 303.9 205 77.1
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 1.6e-80 303.1 205 77.1
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 1.6e-80 303.1 205 76.6
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.5e-80 302.0 205 76.6
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 3.5e-80 302.0 204 76.5
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 4.6e-80 301.6 203 77.3
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 6.0e-80 301.2 205 78.5
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 6.0e-80 301.2 205 76.6
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 6.0e-80 301.2 203 78.3
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 1.0e-79 300.4 206 76.7
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 1.0e-79 300.4 205 78.0
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.3e-79 300.1 204 77.5
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 1.3e-79 300.1 187 82.4
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 1.8e-79 299.7 197 78.2
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 1.8e-79 299.7 201 79.1
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.8e-79 299.7 205 76.1
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 2.3e-79 299.3 205 76.6
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 3.9e-79 298.5 189 82.0
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 6.7e-79 297.7 201 77.1
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 6.7e-79 297.7 206 78.2
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 8.7e-79 297.4 204 77.9
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 8.7e-79 297.4 205 76.6
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.1e-78 297.0 205 75.1
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.1e-78 297.0 205 75.1
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 1.1e-78 297.0 190 82.1
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 2.5e-78 295.8 191 81.2
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 5.6e-78 294.7 189 80.4
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 5.6e-78 294.7 205 74.6
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 5.6e-78 294.7 205 76.1
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 1.6e-77 293.1 205 75.6
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 1.6e-77 293.1 206 77.2
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 2.1e-77 292.7 187 81.3
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 2.8e-77 292.4 205 75.6
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 3.6e-77 292.0 201 74.1
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 1.8e-76 289.7 205 74.1
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 3.1e-76 288.9 191 78.0
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 4.0e-76 288.5 205 75.1
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 9.0e-76 287.3 191 77.5
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 9.0e-76 287.3 205 73.2
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 9.0e-76 287.3 189 78.8
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 2.6e-75 285.8 206 73.8
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 2.6e-75 285.8 204 73.0
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 2.6e-75 285.8 204 73.0
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 4.5e-75 285.0 205 71.2
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 4.5e-75 285.0 205 72.2
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 4.5e-75 285.0 205 72.2
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 4.5e-75 285.0 205 72.2
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 4.5e-75 285.0 196 74.5
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 5.8e-75 284.6 205 71.2
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 9.9e-75 283.9 201 75.1
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 9.9e-75 283.9 205 70.7
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 1.3e-74 283.5 205 71.7
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 2.2e-74 282.7 205 71.7
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.8e-74 282.0 226 69.0
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 4.9e-74 281.6 191 77.5
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 6.4e-74 281.2 203 73.4
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 8.4e-74 280.8 205 70.7
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 1.9e-73 279.6 205 71.2
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 3.2e-73 278.9 205 70.2
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 4.2e-73 278.5 198 73.7
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 9.3e-73 277.3 204 71.6
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 1.6e-72 276.6 205 71.2
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 3.5e-72 275.4 196 75.0
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 3.5e-72 275.4 198 71.7
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 3.9e-71 271.9 226 68.6
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 8.7e-71 270.8 192 73.4
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.5e-70 270.0 204 72.1
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 1.9e-70 269.6 200 70.5
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 3.3e-70 268.9 197 71.6
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 4.3e-70 268.5 164 80.5
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 1.3e-69 266.9 190 74.2
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 2.4e-68 262.7 205 69.3
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 5.3e-68 261.5 159 84.3
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 1.2e-67 260.4 190 71.1
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 2.7e-64 249.2 239 59.4
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 4.6e-64 248.4 316 49.4
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 2.5e-62 242.7 166 75.3
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 1.6e-61 240.0 203 64.5
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 3.4e-59 232.3 159 75.5
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 4.2e-57 225.3 132 83.3
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 2.2e-50 203.0 135 76.3
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 2.9e-50 202.6 116 87.9
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 4.2e-49 198.7 120 83.3
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.0e-47 194.1 135 73.3
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 1.4e-47 193.7 116 85.3
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 1.7e-45 186.8 151 64.9
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 4.8e-45 185.3 125 75.2
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 5.9e-43 178.3 105 84.8
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 6.5e-42 174.9 108 83.3
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 3.1e-36 156.0 148 58.8
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 1.2e-30 137.5 186 44.6
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 4.4e-30 135.6 156 52.6
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 1.4e-28 130.6 184 41.8
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 1.8e-28 130.2 93 72.0
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 6.5e-26 121.7 138 47.1
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 2.5e-25 119.8 205 39.5
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 2.3e-23 113.2 135 50.4
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 4.5e-19 99.0 176 40.9
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 1.2e-16 90.9 258 31.0
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 2.5e-09 66.6 97 41.2
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 2.1e-08 63.5 47 70.2
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 2.8e-08 63.2 159 30.8
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 2.3e-07 60.1 36 75.0
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 5.2e-07 58.9 56 51.8


User provided reference genes

Program Settings