Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 3.2e-178 628.2 304 100.0
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 8.8e-120 434.1 297 70.7
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.8e-117 426.4 277 74.0
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 4.2e-114 415.2 298 65.4
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 2.2e-110 402.9 293 65.5
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 8.3e-110 401.0 276 68.1
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 5.4e-109 398.3 277 67.1
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 2.0e-108 396.4 293 65.5
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 5.9e-108 394.8 274 69.0
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 2.9e-107 392.5 295 65.8
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 5.0e-107 391.7 287 66.6
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 8.6e-107 391.0 279 67.0
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 1.5e-106 390.2 280 64.6
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.9e-106 389.8 295 65.4
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 2.5e-106 389.4 280 64.6
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 5.5e-106 388.3 293 63.5
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 1.2e-105 387.1 293 62.8
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.2e-105 387.1 267 69.7
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 2.1e-105 386.3 285 67.0
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 1.0e-104 384.0 244 74.2
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 1.4e-104 383.6 286 65.0
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.8e-104 383.3 295 63.7
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 2.3e-104 382.9 289 61.9
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.0e-104 382.1 284 65.5
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 5.2e-104 381.7 295 63.7
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 6.8e-104 381.3 294 65.6
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 8.9e-104 380.9 286 64.7
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 8.9e-104 380.9 272 66.5
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.2e-103 380.6 294 65.6
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 3.4e-103 379.0 283 65.0
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 5.7e-103 378.3 263 69.2
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 5.7e-103 378.3 284 64.4
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 5.7e-103 378.3 289 66.4
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 7.5e-103 377.9 301 61.5
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 7.5e-103 377.9 297 64.0
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 9.8e-103 377.5 280 63.9
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 9.8e-103 377.5 280 63.9
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 1.7e-102 376.7 294 60.9
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 4.9e-102 375.2 292 63.4
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 4.9e-102 375.2 287 65.2
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 4.9e-102 375.2 287 63.4
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 6.3e-102 374.8 269 66.9
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 6.3e-102 374.8 306 61.4
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 1.4e-101 373.6 278 65.5
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 4.1e-101 372.1 297 60.6
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 9.2e-101 370.9 286 63.6
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.6e-100 370.2 286 63.3
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 2.7e-100 369.4 258 66.7
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 5.9e-100 368.2 251 68.9
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 5.9e-100 368.2 302 60.9
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 7.8e-100 367.9 272 66.2
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 1.7e-99 366.7 258 67.8
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 1.7e-99 366.7 258 67.8
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 1.7e-99 366.7 296 59.8
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 2.9e-99 365.9 288 63.2
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.9e-99 365.9 288 63.2
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.9e-99 365.5 273 64.8
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 3.9e-99 365.5 295 59.7
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 5.0e-99 365.2 301 58.8
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 8.6e-99 364.4 295 59.7
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.6e-99 364.4 273 64.8
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 8.6e-99 364.4 297 61.3
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 1.5e-98 363.6 271 63.5
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 1.9e-98 363.2 268 65.7
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.9e-98 363.2 302 59.3
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.9e-98 363.2 252 67.9
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 3.3e-98 362.5 294 59.2
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 4.3e-98 362.1 293 59.7
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 5.6e-98 361.7 296 60.1
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 7.3e-98 361.3 259 66.4
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 9.5e-98 360.9 271 64.2
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 2.8e-97 359.4 262 66.4
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 6.1e-97 358.2 288 60.4
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 8.0e-97 357.8 300 58.3
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 1.4e-96 357.1 252 66.7
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 2.3e-96 356.3 252 66.3
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.5e-95 353.6 242 70.2
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 4.1e-93 345.5 284 60.2
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 7.0e-93 344.7 237 67.5
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 1.2e-92 344.0 258 63.6
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 4.6e-92 342.0 229 73.4
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 1.1e-90 337.4 247 65.6
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 7.3e-90 334.7 290 57.6
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 3.6e-89 332.4 214 74.3
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 3.6e-89 332.4 288 55.9
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 4.7e-89 332.0 278 59.0
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.4e-88 330.5 284 59.9
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 2.6e-87 326.2 281 55.5
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 7.5e-87 324.7 267 59.6
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 4.6e-84 315.5 303 53.1
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 6.0e-84 315.1 379 44.6
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 1.7e-83 313.5 266 59.0
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.3e-83 313.2 231 64.9
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 1.1e-82 310.8 243 63.4
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 2.5e-82 309.7 283 55.8
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 4.3e-82 308.9 288 54.2
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 9.5e-82 307.8 285 54.0
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 9.5e-82 307.8 285 54.0
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 9.5e-82 307.8 285 54.0
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 4.0e-80 302.4 285 52.6
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 2.6e-79 299.7 284 54.2
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 3.4e-79 299.3 285 52.3
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 3.4e-79 299.3 284 53.5
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 4.4e-79 298.9 285 52.6
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 4.4e-79 298.9 274 54.7
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 7.6e-79 298.1 287 50.5
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.1e-77 294.3 284 53.2
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 1.9e-77 293.5 264 56.4
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 2.7e-76 289.7 274 54.4
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.0e-75 287.7 243 58.8
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.9e-75 285.8 214 63.6
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 8.9e-72 274.6 180 70.0
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 6.4e-70 268.5 226 57.1
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 9.3e-69 264.6 264 48.5
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 7.3e-66 255.0 282 46.5
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 2.1e-65 253.4 222 57.7
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 8.4e-62 241.5 256 52.0
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 7.1e-61 238.4 263 48.3
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 2.8e-57 226.5 290 43.4
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 2.9e-54 216.5 239 46.9
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 4.9e-54 215.7 203 51.2
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 5.4e-53 212.2 170 61.2
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 1.8e-48 197.2 238 44.1
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 1.3e-43 181.0 208 51.9
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 1.6e-36 157.5 249 36.5
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 3.5e-36 156.4 117 63.2
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 4.2e-29 132.9 108 63.9
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 7.9e-28 128.6 128 47.7
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 1.5e-26 124.4 213 34.3
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 1.4e-21 107.8 169 40.8
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 1.7e-17 94.4 183 30.1
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 1.3e-14 84.7 50 78.0
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.1e-13 81.6 81 51.9
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 1.5e-13 81.3 77 49.4
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 3.0e-11 73.6 68 50.0
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 2.2e-09 67.4 60 50.0
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 8.2e-09 65.5 43 62.8


User provided reference genes

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