Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 9.4e-220 766.5 382 100.0
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 7.3e-180 634.0 408 76.7
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 2.9e-176 622.1 406 76.1
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 1.1e-172 610.1 413 74.3
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 7.3e-172 607.4 412 72.8
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 4.7e-171 604.7 388 77.1
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 1.4e-170 603.2 410 72.2
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 5.2e-170 601.3 411 71.8
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 8.9e-170 600.5 413 72.6
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 1.2e-169 600.1 413 71.7
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 1.5e-169 599.7 413 72.4
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 1.7e-168 596.3 414 72.5
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 2.9e-168 595.5 494 63.8
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 2.9e-168 595.5 413 70.5
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 3.8e-168 595.1 414 71.3
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 3.8e-168 595.1 419 70.9
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 3.8e-168 595.1 401 74.3
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 4.9e-168 594.7 413 71.7
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 4.9e-168 594.7 419 69.9
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 6.4e-168 594.3 413 71.2
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 8.4e-168 594.0 408 72.1
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 8.4e-168 594.0 413 70.7
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 1.4e-167 593.2 413 71.4
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 1.9e-167 592.8 413 70.9
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.9e-167 592.8 401 72.3
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 2.4e-167 592.4 408 71.1
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 3.2e-167 592.0 403 71.7
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 4.2e-167 591.7 415 70.8
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 5.4e-167 591.3 413 70.9
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 7.1e-167 590.9 413 70.5
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 7.1e-167 590.9 413 70.9
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 7.1e-167 590.9 413 70.5
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 7.1e-167 590.9 395 73.7
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 7.1e-167 590.9 412 70.4
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 7.1e-167 590.9 412 70.4
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 7.1e-167 590.9 394 74.9
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 9.2e-167 590.5 407 71.0
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 9.2e-167 590.5 399 73.4
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.2e-166 590.1 405 71.4
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 1.2e-166 590.1 412 70.6
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 1.6e-166 589.7 413 69.5
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 2.7e-166 589.0 408 71.6
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 2.7e-166 589.0 408 71.3
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 3.5e-166 588.6 414 71.0
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 3.5e-166 588.6 406 71.2
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 6.0e-166 587.8 418 71.3
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 1.0e-165 587.0 413 70.2
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 3.0e-165 585.5 406 71.4
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 5.1e-165 584.7 404 71.0
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 5.1e-165 584.7 412 69.7
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 5.1e-165 584.7 404 70.8
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 6.6e-165 584.3 409 70.9
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 6.6e-165 584.3 409 70.9
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.1e-164 583.6 422 68.2
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 1.5e-164 583.2 415 70.6
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 2.5e-164 582.4 413 69.0
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 3.3e-164 582.0 407 71.0
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 4.3e-164 581.6 413 69.2
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 5.6e-164 581.3 412 69.2
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 5.6e-164 581.3 413 70.9
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 7.3e-164 580.9 401 71.3
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 7.3e-164 580.9 412 68.9
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 9.6e-164 580.5 411 69.1
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 1.3e-163 580.1 455 65.1
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 1.6e-163 579.7 410 68.5
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 1.6e-163 579.7 412 69.9
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 1.6e-163 579.7 413 69.2
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 1.6e-163 579.7 407 69.8
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 2.1e-163 579.3 412 68.9
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 2.1e-163 579.3 410 69.3
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 2.8e-163 578.9 413 69.5
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 4.8e-163 578.2 399 69.4
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 4.8e-163 578.2 413 68.5
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 4.8e-163 578.2 408 70.8
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 8.1e-163 577.4 399 69.4
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 1.1e-162 577.0 394 72.6
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 1.1e-162 577.0 413 70.5
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 1.1e-162 577.0 436 66.3
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 3.1e-162 575.5 381 73.0
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 3.1e-162 575.5 403 71.7
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 4.0e-162 575.1 407 70.8
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.3e-162 574.7 452 63.9
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 9.0e-162 573.9 408 70.1
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 1.2e-161 573.5 399 68.9
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 1.2e-161 573.5 406 70.0
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 1.2e-161 573.5 412 68.9
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.0e-161 572.8 423 66.9
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 7.6e-161 570.9 408 69.6
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 7.6e-161 570.9 412 69.7
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 7.6e-161 570.9 412 69.7
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 9.9e-161 570.5 436 65.8
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 1.3e-160 570.1 412 68.7
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 2.2e-160 569.3 396 71.2
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 3.8e-160 568.5 426 67.4
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 9.3e-159 563.9 404 70.5
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 9.3e-159 563.9 407 68.6
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 2.1e-158 562.8 389 71.7
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 3.9e-157 558.5 405 68.1
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 1.4e-154 550.1 400 67.0
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.4e-154 550.1 461 61.6
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 2.9e-152 542.3 398 68.1
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 1.9e-151 539.7 432 63.0
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 2.4e-151 539.3 412 65.8
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 1.2e-150 537.0 438 61.2
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 1.8e-149 533.1 448 60.7
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 5.1e-149 531.6 374 71.1
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 1.8e-146 523.1 393 65.6
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 2.6e-145 519.2 407 63.9
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 1.5e-140 503.4 360 70.0
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.5e-140 502.7 411 64.0
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 3.3e-140 502.3 354 69.8
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 4.8e-139 498.4 362 68.0
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 6.2e-139 498.0 415 62.9
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 6.9e-138 494.6 354 70.1
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 3.4e-137 492.3 413 59.1
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.7e-134 482.6 395 64.1
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 1.3e-133 480.3 417 58.3
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 5.1e-133 478.4 383 62.9
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 8.2e-131 471.1 397 58.2
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 2.7e-126 456.1 381 61.4
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 7.9e-126 454.5 396 58.3
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 3.4e-121 439.1 389 60.7
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 5.7e-116 421.8 316 66.5
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 2.9e-112 409.5 363 59.0
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 4.4e-100 369.0 411 47.9
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 1.4e-98 364.0 228 76.3
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.2e-97 360.9 368 53.8
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 4.2e-95 352.4 207 80.7
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 4.2e-95 352.4 408 47.5
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 9.4e-95 351.3 205 80.0
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 1.3e-91 340.9 204 79.4
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 3.8e-88 329.3 443 44.2
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 6.8e-85 318.5 400 45.5
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 7.0e-82 308.5 259 63.3
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 2.1e-78 297.0 368 49.5
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 2.8e-78 296.6 280 56.4
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 4.1e-74 282.7 385 43.9
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 1.0e-64 251.5 459 34.4
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 2.8e-62 243.4 340 41.8
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 3.6e-62 243.0 154 73.4
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.4e-61 241.1 426 39.2
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 1.7e-59 234.2 155 68.4
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.1e-56 222.6 401 40.1
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 8.9e-53 211.8 227 51.5
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 2.0e-52 210.7 224 54.9
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 2.2e-51 207.2 173 62.4
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.4e-50 204.5 168 64.3
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 1.6e-49 201.1 176 61.4
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 3.1e-45 186.8 121 72.7
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.6e-39 166.0 303 38.6
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 1.7e-35 154.5 104 74.0
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 4.2e-34 149.8 249 38.2
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 1.2e-33 148.3 125 60.8
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 3.4e-28 130.2 281 32.7
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 2.5e-26 124.0 85 67.1
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 3.5e-25 120.2 75 74.7
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 7.9e-25 119.0 75 73.3
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 5.7e-23 112.8 103 56.3
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 7.4e-23 112.5 58 86.2
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 4.8e-22 109.8 57 86.0
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 1.4e-21 108.2 66 71.2
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 7.7e-12 75.9 54 72.2
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 1.3e-11 75.1 44 70.5
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 6.5e-11 72.8 45 68.9
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 2.5e-10 70.9 231 27.3
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 8.8e-08 62.4 50 62.0
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.5e-07 61.6 138 36.2
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 2.5e-07 60.8 53 56.6
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 3.3e-07 60.5 192 28.6
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 4.3e-07 60.1 192 29.2
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 5.7e-07 59.7 104 40.4
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 7.4e-07 59.3 104 40.4
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 1.3e-06 58.5 193 29.5
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 1.7e-06 58.2 154 33.8
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 1.7e-06 58.2 154 33.8
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 2.2e-06 57.8 177 29.4
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 2.2e-06 57.8 154 33.8
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 2.2e-06 57.8 125 36.0
Hma1.2p1_0494F.1_g165410 Hydrangea macrophylla HOM05D000783 ORTHO05D000705 2.8e-06 57.4 143 27.3
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 4.8e-06 56.6 135 32.6
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 6.3e-06 56.2 146 36.3
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 8.2e-06 55.8 154 32.5
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 8.2e-06 55.8 104 38.5


User provided reference genes

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