Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.7e-100 369.0 233 100.0
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 1.6e-28 130.6 192 49.5
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 5.1e-27 125.6 192 48.4
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 1.1e-26 124.4 193 46.1
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.0e-26 123.6 192 44.3
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 2.0e-26 123.6 192 44.3
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 4.4e-26 122.5 192 45.8
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 4.4e-26 122.5 192 44.3
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.8e-24 117.1 192 42.7
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 6.9e-24 115.2 194 42.3
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 9.1e-24 114.8 198 43.9
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.2e-23 114.4 193 43.0
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 2.0e-23 113.6 193 45.1
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 4.5e-23 112.5 191 41.9
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 5.9e-23 112.1 194 44.3
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 1.0e-22 111.3 193 42.5
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.0e-22 111.3 193 44.6
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 5.0e-22 109.0 193 43.5
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 5.0e-22 109.0 193 44.6
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 6.5e-22 108.6 191 44.5
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 8.5e-22 108.2 205 42.4
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.4e-21 107.5 196 43.4
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.5e-21 106.7 200 41.0
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 2.5e-21 106.7 194 41.2
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 3.2e-21 106.3 193 45.6
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 5.5e-21 105.5 194 45.9
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 7.2e-21 105.1 193 43.5
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 9.4e-21 104.8 194 42.8
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.2e-20 104.4 190 40.0
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 2.1e-20 103.6 194 44.3
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.7e-20 103.2 190 42.6
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 3.6e-20 102.8 191 40.8
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 3.6e-20 102.8 191 39.3
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.7e-20 102.4 193 43.5
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.7e-20 102.4 193 43.5
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 4.7e-20 102.4 200 40.5
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 4.7e-20 102.4 193 40.4
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 6.1e-20 102.1 193 39.4
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 6.1e-20 102.1 193 42.5
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 6.1e-20 102.1 192 42.2
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.0e-20 101.7 202 40.1
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 8.0e-20 101.7 193 42.5
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 8.0e-20 101.7 196 43.4
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.4e-19 100.9 197 40.6
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.4e-19 100.9 202 40.1
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.4e-19 100.9 201 41.3
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 1.4e-19 100.9 191 40.8
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 1.8e-19 100.5 196 43.4
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.8e-19 100.5 194 41.8
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 2.3e-19 100.1 191 46.6
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 3.0e-19 99.8 191 40.8
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 3.9e-19 99.4 191 40.8
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 3.9e-19 99.4 193 40.9
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.7e-19 98.6 213 38.0
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.7e-19 98.6 213 38.0
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 6.7e-19 98.6 195 41.5
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.7e-19 98.6 193 42.0
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 8.8e-19 98.2 167 43.1
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 8.8e-19 98.2 198 41.4
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.1e-18 97.8 194 41.2
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.1e-18 97.8 191 39.3
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 2.0e-18 97.1 191 40.8
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 2.0e-18 97.1 190 38.4
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 2.0e-18 97.1 191 40.3
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 2.0e-18 97.1 191 40.3
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.0e-18 97.1 196 41.3
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.6e-18 96.7 194 41.2
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 3.3e-18 96.3 191 39.8
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 3.3e-18 96.3 191 39.8
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 7.4e-18 95.1 212 38.7
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 9.7e-18 94.7 196 39.8
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.7e-17 94.0 190 41.6
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 2.2e-17 93.6 196 36.7
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 2.2e-17 93.6 195 39.5
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 2.2e-17 93.6 198 41.9
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 2.2e-17 93.6 191 39.8
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 2.8e-17 93.2 197 41.1
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 3.7e-17 92.8 199 40.2
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.7e-17 92.8 194 42.3
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 6.3e-17 92.0 192 41.1
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 8.2e-17 91.7 154 46.1
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 8.2e-17 91.7 191 41.4
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.1e-16 91.3 195 37.9
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 1.4e-16 90.9 191 39.3
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 2.4e-16 90.1 159 40.3
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 3.1e-16 89.7 191 40.3
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 3.1e-16 89.7 193 40.4
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 4.1e-16 89.4 191 39.8
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 5.3e-16 89.0 191 39.8
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 5.3e-16 89.0 204 42.2
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 7.0e-16 88.6 196 40.8
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 1.2e-15 87.8 193 38.9
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.2e-15 87.8 191 39.3
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 1.6e-15 87.4 191 39.3
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 1.6e-15 87.4 193 38.9
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 1.6e-15 87.4 193 38.9
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.0e-15 87.0 195 41.5
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 2.0e-15 87.0 193 39.9
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 2.0e-15 87.0 193 35.8
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 3.5e-15 86.3 193 38.9
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 3.5e-15 86.3 193 38.9
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 5.9e-15 85.5 193 38.3
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 5.9e-15 85.5 193 36.8
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.0e-14 84.7 192 37.5
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 1.7e-14 84.0 170 42.4
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 1.7e-14 84.0 192 38.5
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 1.7e-14 84.0 154 38.3
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 2.9e-14 83.2 194 39.7
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 3.8e-14 82.8 192 38.5
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 3.8e-14 82.8 196 38.3
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 5.0e-14 82.4 150 42.7
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 6.5e-14 82.0 194 39.2
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 8.5e-14 81.6 195 35.9
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.1e-13 81.3 191 37.7
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.1e-13 81.3 192 37.5
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.5e-13 80.9 196 37.2
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 4.2e-13 79.3 192 38.0
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 4.2e-13 79.3 196 38.3
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.1e-12 77.0 192 36.5
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 3.6e-12 76.3 191 36.1
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 4.7e-12 75.9 194 38.1
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 4.7e-12 75.9 142 38.7
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.0e-11 74.7 132 44.7
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 1.4e-11 74.3 200 37.0
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 1.8e-11 73.9 192 35.9
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 5.2e-11 72.4 128 46.9
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 5.2e-11 72.4 197 35.0
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 6.7e-11 72.0 127 44.9
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.2e-10 71.2 200 36.0
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 1.2e-10 71.2 191 36.1
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.5e-10 70.9 185 36.8
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-10 70.9 154 39.6
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 1.5e-10 70.9 196 33.7
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 3.3e-10 69.7 155 38.7
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 3.3e-10 69.7 120 45.8
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 4.4e-10 69.3 186 34.9
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 5.7e-10 68.9 165 36.4
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 5.7e-10 68.9 155 36.1
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-09 67.8 154 37.7
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 2.2e-09 67.0 155 37.4
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 3.7e-09 66.2 131 39.7
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 4.8e-09 65.9 165 37.0
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 6.3e-09 65.5 197 35.0
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.4e-08 64.3 193 34.2
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.8e-08 63.9 206 35.4
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 3.1e-08 63.2 132 40.2
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 9.1e-08 61.6 156 36.5
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 9.1e-08 61.6 156 36.5
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 9.1e-08 61.6 100 43.0
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 9.1e-08 61.6 191 33.5
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 1.6e-07 60.8 202 32.7
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 2.0e-07 60.5 201 31.3
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 2.7e-07 60.1 129 38.0
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 3.5e-07 59.7 169 30.8
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 3.5e-07 59.7 190 31.6
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 5.9e-07 58.9 94 51.1
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 7.7e-07 58.5 197 31.5
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 1.0e-06 58.2 195 33.8
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 2.9e-06 56.6 190 32.1


User provided reference genes

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