Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 8.8e-254 879.8 438 100.0
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 4.9e-196 688.0 443 79.2
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 2.4e-182 642.5 448 72.3
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 5.2e-182 641.3 404 77.2
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 6.8e-182 641.0 439 73.3
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 1.5e-181 639.8 439 72.7
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 3.4e-181 638.6 439 73.1
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 1.1e-179 633.6 445 73.5
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.9e-179 632.9 438 72.4
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 9.2e-179 630.6 437 71.9
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 2.1e-178 629.4 437 71.6
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 6.0e-178 627.9 409 75.1
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 7.8e-178 627.5 438 72.4
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 7.8e-178 627.5 440 71.6
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.3e-177 626.7 437 71.4
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 1.3e-177 626.7 406 74.6
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.9e-177 625.2 436 71.6
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 2.5e-176 622.5 435 71.5
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 7.3e-176 620.9 400 76.2
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 9.6e-176 620.5 447 70.9
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 4.7e-175 618.2 440 71.4
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 5.3e-174 614.8 436 70.9
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 1.5e-173 613.2 447 71.1
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 2.0e-173 612.8 437 69.3
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 3.4e-173 612.1 434 70.0
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.4e-173 612.1 436 70.2
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 4.4e-173 611.7 445 69.9
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 9.9e-173 610.5 393 74.3
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 2.2e-172 609.4 409 73.6
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 2.9e-172 609.0 445 69.7
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 3.8e-172 608.6 405 74.6
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 4.9e-172 608.2 432 69.4
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 8.4e-172 607.4 438 70.1
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.4e-171 606.7 445 70.6
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 3.2e-171 605.5 399 71.7
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.2e-171 605.1 440 71.6
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.1e-170 602.8 444 69.4
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 1.0e-169 600.5 446 69.3
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.0e-169 600.5 435 68.0
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.0e-169 600.5 399 71.4
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.7e-169 599.7 441 69.6
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.9e-169 598.6 441 70.1
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 3.9e-169 598.6 437 68.6
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 5.1e-169 598.2 438 68.0
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 1.1e-168 597.0 446 69.1
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 3.3e-168 595.5 433 69.3
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 1.6e-167 593.2 402 72.9
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 2.8e-167 592.4 437 68.2
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 3.6e-167 592.0 433 67.9
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 4.8e-167 591.7 432 70.1
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 6.2e-167 591.3 400 73.2
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 6.2e-167 591.3 408 71.6
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 1.4e-166 590.1 404 70.0
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 3.1e-166 589.0 418 70.1
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 4.0e-166 588.6 443 68.6
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 6.9e-166 587.8 440 67.5
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 6.9e-166 587.8 411 71.5
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.2e-165 587.0 420 70.5
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 1.5e-165 586.6 421 71.3
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.6e-165 585.9 406 69.5
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 9.9e-165 583.9 442 67.6
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 1.7e-164 583.2 407 71.0
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 2.2e-164 582.8 418 69.9
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 2.2e-164 582.8 405 71.9
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 2.9e-164 582.4 396 72.2
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 3.8e-164 582.0 407 71.3
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 3.8e-164 582.0 407 71.3
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 3.8e-164 582.0 448 66.1
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 2.4e-163 579.3 435 67.1
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 2.4e-163 579.3 424 68.9
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.2e-163 578.9 450 68.2
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 6.0e-162 574.7 424 68.6
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 6.0e-162 574.7 441 68.0
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 1.3e-161 573.5 417 69.5
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 2.3e-161 572.8 436 66.3
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 2.3e-161 572.8 399 71.2
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 3.0e-161 572.4 418 69.1
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 3.0e-161 572.4 443 67.5
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 3.9e-161 572.0 403 70.2
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.1e-160 570.5 442 67.2
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 5.6e-160 568.2 407 70.3
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 5.6e-160 568.2 386 71.2
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 9.6e-160 567.4 400 69.5
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 2.8e-159 565.8 395 71.9
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 3.7e-159 565.5 421 67.7
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 3.7e-159 565.5 447 64.7
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 1.4e-158 563.5 440 64.1
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 1.8e-158 563.1 412 69.9
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.2e-157 560.5 438 67.1
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.5e-157 560.1 434 65.9
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.5e-157 560.1 434 65.9
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 1.5e-157 560.1 393 71.2
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 3.4e-157 558.9 386 71.5
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 4.5e-157 558.5 461 64.0
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 3.8e-156 555.4 395 70.4
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 6.4e-156 554.7 446 64.3
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 3.2e-155 552.4 428 66.1
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.2e-154 550.4 370 73.2
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 1.3e-153 547.0 441 66.2
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.9e-152 543.1 404 66.3
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 2.5e-152 542.7 388 68.3
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 5.6e-152 541.6 406 66.7
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 4.8e-151 538.5 438 65.3
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 6.2e-151 538.1 384 69.5
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 1.2e-149 533.9 411 64.0
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 6.5e-148 528.1 402 66.2
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 2.5e-147 526.2 433 62.1
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 9.3e-147 524.2 385 66.2
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 1.2e-146 523.9 423 62.2
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 6.1e-146 521.5 426 64.8
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 3.0e-145 519.2 308 80.8
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 2.5e-144 516.2 380 68.7
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 3.3e-144 515.8 384 65.6
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 5.7e-144 515.0 380 68.2
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 1.4e-142 510.4 385 65.5
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 3.1e-142 509.2 382 64.4
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 5.3e-142 508.4 377 66.3
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 2.0e-141 506.5 432 60.2
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 4.5e-141 505.4 348 72.4
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 7.7e-141 504.6 380 64.7
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 4.6e-138 495.4 411 65.0
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 3.9e-137 492.3 330 72.1
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 5.1e-137 491.9 384 63.5
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 3.3e-136 489.2 400 63.2
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 9.7e-136 487.6 421 60.8
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 9.1e-134 481.1 419 62.3
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 2.3e-129 466.5 385 59.7
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.1e-126 457.6 383 61.4
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.9e-124 449.5 263 81.4
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.1e-118 429.1 250 82.4
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.3e-118 428.7 246 83.3
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 1.0e-113 414.5 278 71.2
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.6e-104 383.3 280 66.8
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 5.5e-99 365.5 278 63.3
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 6.8e-97 358.6 385 50.1
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.3e-92 344.4 397 48.6
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 7.3e-91 338.6 274 58.4
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 2.6e-88 330.1 234 67.9
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 3.4e-88 329.7 421 45.6
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 7.5e-88 328.6 256 63.7
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.8e-82 310.1 197 81.2
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.7e-82 309.3 174 87.4
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 6.8e-65 252.3 176 69.9
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-64 251.5 198 66.2
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.9e-62 244.2 292 45.2
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.8e-58 230.3 198 62.6
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 3.6e-58 229.9 202 57.4
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 1.8e-49 201.1 204 54.4
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 5.4e-46 189.5 146 64.4
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 4.8e-42 176.4 228 43.0
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 4.8e-42 176.4 118 74.6
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 2.5e-35 154.1 82 84.1
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 4.3e-35 153.3 232 40.5
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 6.9e-33 146.0 164 50.0
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 4.2e-30 136.7 335 32.5
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.3e-28 131.7 295 32.5
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.4e-27 125.9 63 90.5
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.2e-26 124.4 63 88.9
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.7e-26 123.6 63 88.9
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 4.8e-26 123.2 246 34.1
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 2.4e-25 120.9 354 29.9
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 5.3e-25 119.8 188 40.4
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 1.7e-23 114.8 76 72.4
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 3.0e-20 104.0 141 40.4
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 2.5e-19 100.9 186 36.0
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 5.9e-16 89.7 146 39.7
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.6e-13 81.6 94 50.0
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 2.2e-10 71.2 67 50.7
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.3e-10 69.7 38 81.6
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 9.1e-09 65.9 88 37.5
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 9.1e-09 65.9 119 37.8


User provided reference genes

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