Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 2604.7 1319 100.0
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2280.0 1323 87.0
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2272.3 1323 86.7
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2143.2 1395 80.1
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2062.7 1356 76.4
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2055.8 1352 77.2
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2051.9 1350 77.0
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2050.8 1351 76.8
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2047.7 1351 77.5
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2045.8 1349 76.6
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2044.2 1350 77.3
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2041.2 1352 76.8
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2035.0 1350 75.5
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2032.7 1348 76.5
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2027.3 1350 76.6
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2026.5 1393 74.3
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 2025.8 1500 71.9
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2025.8 1347 76.2
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2021.5 1350 75.6
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2020.0 1348 76.3
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2020.0 1350 75.9
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2018.4 1350 75.7
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2018.4 1351 75.6
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2016.9 1350 75.9
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2014.6 1362 75.0
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2013.0 1350 75.4
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2011.5 1348 76.3
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2008.8 1350 75.7
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2003.4 1350 74.7
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2001.9 1353 74.7
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2001.1 1348 75.7
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 1998.4 1352 74.9
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 1994.9 1350 74.2
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 1992.2 1352 75.1
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 1991.9 1336 75.5
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1991.5 1353 74.5
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 1988.8 1387 73.5
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1983.0 1348 75.3
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 1981.8 1352 74.1
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 1979.5 1347 74.5
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 1979.1 1352 73.7
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 1978.0 1351 73.9
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 1978.0 1347 74.5
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 1976.1 1347 74.5
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 1975.3 1354 73.9
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 1974.5 1352 73.7
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 1969.1 1352 73.8
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 1968.7 1418 71.2
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 1968.7 1349 73.9
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 1965.7 1328 74.9
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 1965.3 1349 73.5
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 1964.9 1334 75.1
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 1963.3 1352 73.4
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 1963.0 1352 73.6
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 1961.8 1342 74.2
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 1961.4 1351 73.6
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 1957.6 1304 75.8
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 1955.6 1442 70.0
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 1955.3 1337 74.0
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 1953.7 1351 74.0
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 1953.7 1340 74.2
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 1946.0 1350 73.0
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1943.3 1364 73.6
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 1941.8 1353 73.3
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 1935.6 1366 72.3
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 1932.1 1365 72.2
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 1931.8 1350 73.3
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 1931.4 1365 72.5
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 1924.8 1350 72.4
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 1919.1 1364 72.0
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 1918.7 1365 72.1
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 1917.9 1365 71.9
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 1917.5 1365 71.9
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 1913.3 1365 71.6
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 1912.1 1380 70.9
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1904.8 1191 80.5
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 1904.8 1359 71.4
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 1901.3 1254 76.7
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 1898.6 1348 72.7
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 1897.1 1375 71.3
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 1881.7 1308 72.8
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 1832.8 1185 77.4
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 1785.0 1660 59.4
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1773.4 1265 72.3
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1769.6 1331 68.1
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1748.4 1351 66.0
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1744.9 1315 69.7
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1708.3 1354 64.8
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1694.1 1332 64.7
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1375.1 1084 63.6
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1352.0 931 73.3
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1305.4 1382 50.3
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1273.1 976 67.3
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1270.8 1345 49.4
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1263.1 1355 48.6
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1242.3 784 79.8
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1226.5 1342 48.7
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1101.7 815 68.8
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1095.5 881 62.9
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 3.6e-311 1072.0 760 71.3
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 2.1e-306 1056.2 676 79.3
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 5.1e-305 1051.6 791 68.5
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 3.9e-257 892.5 782 55.8
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 4.7e-242 842.4 551 77.3
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.4e-230 804.3 600 68.0
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 4.2e-182 643.3 511 64.8
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 1.8e-169 601.3 425 73.2
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.9e-166 591.3 461 64.6
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 4.5e-160 570.1 1503 27.8
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 9.7e-139 499.2 536 53.0
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.7e-127 461.8 537 47.5
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 2.0e-120 438.3 320 69.1
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 1.6e-104 385.6 537 45.1
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.8e-97 362.1 226 77.4
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 1.6e-88 332.4 221 74.2
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.0e-87 329.7 222 73.4
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 3.6e-61 241.5 418 38.3
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 3.8e-58 231.5 299 44.5
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 6.0e-56 224.2 146 74.7
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 2.2e-50 205.7 155 68.4
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.4e-44 185.7 129 69.0
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 4.2e-33 148.3 116 69.8
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 5.5e-33 147.9 133 63.2
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 2.2e-29 136.0 84 77.4
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 6.3e-29 134.4 113 63.7
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 8.2e-29 134.0 106 56.6
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 2.4e-28 132.5 89 64.0
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 1.5e-27 129.8 112 61.6
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 9.4e-25 120.6 117 52.1
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 2.7e-24 119.0 87 63.2
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 4.6e-24 118.2 150 50.7
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 1.7e-21 109.8 239 36.0
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 6.3e-21 107.8 173 38.2
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 3.1e-20 105.5 92 62.0
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.1e-20 105.5 68 76.5
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 4.1e-20 105.1 98 50.0
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.2e-16 93.6 124 43.5
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.0e-15 89.0 51 80.4
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 5.1e-15 88.2 91 58.2
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 3.3e-14 85.5 116 44.8
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 3.7e-13 82.0 54 79.6
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 2.4e-12 79.3 61 68.9
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 4.5e-11 75.1 42 88.1
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 5.5e-09 68.2 137 35.0
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 9.4e-09 67.4 73 46.6
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 4.7e-08 65.1 44 72.7
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 4.7e-08 65.1 44 72.7
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 4.7e-08 65.1 44 72.7
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 4.7e-08 65.1 44 72.7
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 4.7e-08 65.1 44 72.7
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 2.3e-07 62.8 54 53.7
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 6.7e-07 61.2 43 69.8
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 6.7e-07 61.2 56 57.1
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 6.7e-07 61.2 56 57.1


User provided reference genes

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