Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 2.2e-102 375.6 180 100.0
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 2.2e-49 199.5 125 80.8
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 3.7e-49 198.7 125 78.4
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.1e-48 195.3 125 77.6
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 3.5e-47 192.2 125 76.8
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.0e-46 190.7 125 72.8
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.7e-46 189.9 125 72.8
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.7e-46 189.9 125 73.6
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 2.9e-46 189.1 125 75.2
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 1.1e-45 187.2 125 71.2
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 2.5e-45 186.0 138 65.2
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 2.5e-45 186.0 125 71.2
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 3.2e-45 185.7 125 72.8
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 7.2e-45 184.5 125 71.2
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 7.2e-45 184.5 125 72.8
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.2e-44 183.7 125 72.8
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 6.1e-44 181.4 142 66.2
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 6.1e-44 181.4 125 71.2
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 8.0e-44 181.0 125 72.0
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.0e-43 180.6 126 72.2
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 6.7e-43 177.9 123 70.7
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 8.8e-43 177.6 123 70.7
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.5e-42 176.8 133 68.4
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 2.0e-42 176.4 125 70.4
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 2.6e-42 176.0 121 71.1
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.6e-42 176.0 125 68.8
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 2.6e-42 176.0 125 69.6
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 2.6e-42 176.0 125 71.2
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 4.4e-42 175.3 134 63.4
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 5.7e-42 174.9 128 67.2
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 7.5e-42 174.5 125 67.2
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 9.7e-42 174.1 125 68.8
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 9.7e-42 174.1 125 66.4
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 9.7e-42 174.1 126 69.8
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 9.7e-42 174.1 123 69.1
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.3e-41 173.7 127 69.3
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.7e-41 173.3 125 65.6
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 8.2e-41 171.0 125 69.6
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 8.2e-41 171.0 125 64.8
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 8.2e-41 171.0 125 64.8
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.1e-40 170.6 125 64.8
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 1.1e-40 170.6 120 70.0
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.8e-40 169.9 125 68.8
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.8e-40 169.9 126 68.3
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.8e-40 169.9 125 64.8
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.4e-40 169.5 125 67.2
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 3.1e-40 169.1 119 68.1
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 4.1e-40 168.7 129 69.0
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 5.3e-40 168.3 125 68.8
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.2e-39 167.2 128 66.4
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.6e-39 166.8 128 65.6
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.0e-39 166.4 126 67.5
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.0e-39 166.4 119 67.2
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 2.7e-39 166.0 122 65.6
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 5.9e-39 164.9 126 68.3
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 5.9e-39 164.9 119 69.7
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 7.7e-39 164.5 126 67.5
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.0e-38 164.1 128 64.8
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.0e-38 164.1 124 65.3
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.0e-38 164.1 121 65.3
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.3e-38 163.7 119 66.4
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.7e-38 163.3 126 66.7
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 3.8e-38 162.2 122 65.6
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 3.8e-38 162.2 130 62.3
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 6.5e-38 161.4 125 65.6
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 6.5e-38 161.4 126 65.9
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 6.5e-38 161.4 126 65.9
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 6.5e-38 161.4 123 65.0
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 8.5e-38 161.0 123 65.9
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.1e-37 160.6 126 65.1
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.1e-37 160.6 123 64.2
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.5e-37 160.2 121 64.5
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.5e-37 160.2 126 65.1
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.9e-37 159.8 131 61.8
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 3.2e-37 159.1 126 65.1
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.2e-36 157.1 122 64.8
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.2e-36 157.1 125 61.6
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.6e-36 156.8 125 62.4
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.7e-36 156.0 126 61.1
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 2.7e-36 156.0 126 65.9
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 3.6e-36 155.6 125 62.4
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 3.6e-36 155.6 124 62.9
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 4.7e-36 155.2 119 62.2
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 8.0e-36 154.5 133 60.9
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 1.4e-35 153.7 122 59.8
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.8e-35 153.3 119 61.3
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 3.0e-35 152.5 124 61.3
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 4.0e-35 152.1 126 61.9
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 5.2e-35 151.8 122 59.0
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 8.8e-35 151.0 126 65.1
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 2.6e-34 149.4 121 66.9
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.4e-34 149.1 126 61.1
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.3e-33 147.1 126 61.1
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.3e-33 147.1 126 60.3
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.3e-33 147.1 121 62.0
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 2.2e-33 146.4 121 65.3
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 4.8e-33 145.2 126 62.7
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 6.3e-33 144.8 125 61.6
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 6.3e-33 144.8 121 61.2
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 3.1e-32 142.5 133 58.6
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 3.1e-32 142.5 127 58.3
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 5.4e-32 141.7 126 57.9
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 7.0e-32 141.4 127 59.1
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 2.0e-31 139.8 127 59.1
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 2.0e-31 139.8 127 59.1
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 2.0e-31 139.8 127 59.1
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.7e-31 139.4 99 65.7
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 5.9e-31 138.3 127 59.1
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 1.0e-30 137.5 127 57.5
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 1.0e-30 137.5 127 57.5
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 8.6e-30 134.4 123 58.5
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.9e-29 133.3 129 56.6
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 5.5e-29 131.7 126 55.6
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 5.5e-29 131.7 126 55.6
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 2.1e-28 129.8 124 59.7
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.1e-28 129.8 129 57.4
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 2.8e-28 129.4 126 54.8
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 5.2e-27 125.2 108 56.5
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.2e-26 124.0 128 54.7
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.2e-26 124.0 116 56.0
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.5e-26 121.3 90 67.8
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.7e-25 120.2 98 65.3
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 1.7e-25 120.2 115 53.0
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 6.3e-25 118.2 118 53.4
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.1e-24 117.5 98 64.3
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.8e-24 116.7 85 64.7
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 5.4e-24 115.2 95 61.1
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.0e-22 110.9 86 62.8
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.1e-21 107.5 117 47.0
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.1e-21 107.5 143 44.1
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.9e-21 106.7 118 50.0
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 7.3e-21 104.8 118 50.0
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 7.3e-21 104.8 83 55.4
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 1.2e-20 104.0 86 62.8
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 1.2e-20 104.0 134 44.8
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 4.7e-20 102.1 120 46.7
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 6.1e-20 101.7 84 56.0
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 5.2e-19 98.6 73 65.8
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 3.4e-18 95.9 63 69.8
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 5.7e-18 95.1 60 71.7
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 4.1e-16 89.0 60 66.7
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 7.0e-16 88.2 69 56.5
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 5.0e-14 82.0 129 45.7
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.9e-13 80.1 85 48.2
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.3e-13 79.3 74 47.3
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.6e-13 78.6 63 61.9
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 7.3e-13 78.2 89 51.7
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.1e-12 76.6 61 63.9
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 2.8e-12 76.3 121 38.0
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 6.2e-12 75.1 64 62.5
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.3e-11 73.2 60 58.3
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.2e-11 72.0 56 60.7
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.2e-11 72.0 55 61.8
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.2e-11 72.0 56 60.7
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.2e-11 72.0 63 57.1
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 8.9e-11 71.2 56 66.1
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.6e-10 69.7 63 55.6
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 3.4e-10 69.3 70 47.1
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 1.7e-09 67.0 104 41.3
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 7.0e-08 61.6 60 56.7
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 1.6e-07 60.5 39 69.2
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 6.0e-07 58.5 75 40.0
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 6.0e-07 58.5 80 48.8
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 8.6e-06 54.7 64 40.6


User provided reference genes

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