Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 2.7e-310 1067.8 520 100.0
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 1.7e-280 968.8 520 88.1
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 3.6e-270 934.5 520 84.8
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 2.0e-265 918.7 520 82.7
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 2.6e-265 918.3 520 83.5
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 8.5e-264 913.3 518 83.8
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.5e-263 911.8 517 82.2
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.2e-262 909.4 517 82.0
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 3.6e-262 907.9 520 81.9
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 6.7e-261 903.7 520 81.5
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 2.0e-260 902.1 520 81.7
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.3e-259 899.4 520 81.0
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 2.8e-259 898.3 518 81.7
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 3.7e-259 897.9 520 81.2
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 3.7e-259 897.9 542 78.2
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 1.2e-257 892.9 520 80.8
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.5e-257 892.5 520 81.2
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 2.0e-257 892.1 520 80.4
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 2.0e-257 892.1 518 81.9
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 3.8e-256 887.9 520 79.4
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.1e-255 886.3 520 80.2
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 4.2e-255 884.4 521 80.0
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 9.4e-255 883.2 554 76.2
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 4.7e-254 880.9 517 80.7
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 1.0e-253 879.8 516 80.4
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 1.4e-253 879.4 518 80.5
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 3.0e-253 878.2 520 79.4
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 3.0e-253 878.2 516 80.2
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.2e-253 877.5 520 79.8
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 8.8e-253 876.7 515 81.2
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 8.8e-253 876.7 519 79.0
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 5.7e-252 874.0 513 80.1
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 5.7e-252 874.0 520 79.2
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 7.4e-252 873.6 520 79.8
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 9.7e-252 873.2 520 79.4
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 9.7e-252 873.2 520 79.8
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 2.8e-251 871.7 520 78.7
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 4.8e-251 870.9 526 77.8
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 4.8e-251 870.9 520 78.5
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 8.2e-251 870.2 519 79.2
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 1.1e-250 869.8 521 78.9
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.1e-250 869.8 523 78.0
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.1e-250 869.8 520 78.8
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 1.1e-250 869.8 520 78.8
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 1.1e-250 869.8 521 78.9
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 1.4e-250 869.4 517 78.9
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.4e-250 869.4 520 77.7
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.4e-250 869.4 518 77.8
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 1.8e-250 869.0 521 78.9
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 3.1e-250 868.2 516 80.0
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 3.1e-250 868.2 521 78.7
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 4.1e-250 867.8 518 79.2
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 4.1e-250 867.8 518 79.7
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 5.3e-250 867.5 544 75.7
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 5.3e-250 867.5 523 78.2
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 9.1e-250 866.7 521 77.7
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.2e-249 866.3 521 78.5
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.2e-249 866.3 523 77.8
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.6e-249 865.1 523 78.0
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 4.5e-249 864.4 516 78.1
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 2.2e-248 862.1 521 78.1
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 2.9e-248 861.7 518 79.3
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 3.8e-248 861.3 520 77.3
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 5.0e-248 860.9 530 77.4
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.9e-247 859.0 520 80.4
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 5.5e-247 857.4 520 77.3
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 7.2e-247 857.1 521 78.1
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 7.2e-247 857.1 521 77.7
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 7.2e-247 857.1 518 77.0
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 2.1e-246 855.5 520 77.7
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 2.7e-246 855.1 520 77.7
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 2.7e-246 855.1 520 77.7
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 1.8e-245 852.4 513 77.0
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 1.8e-245 852.4 521 76.8
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 2.3e-245 852.0 521 77.2
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 2.3e-245 852.0 521 76.6
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 4.0e-245 851.3 520 79.8
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 6.8e-245 850.5 521 76.4
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 6.8e-245 850.5 521 76.6
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 6.8e-245 850.5 521 76.6
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 6.8e-245 850.5 521 76.4
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 1.2e-244 849.7 517 78.1
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 1.5e-244 849.4 519 76.5
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 2.6e-244 848.6 466 85.0
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 3.4e-244 848.2 519 76.7
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 4.4e-244 847.8 517 77.6
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 5.7e-244 847.4 519 76.5
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 9.7e-244 846.7 520 77.1
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 1.7e-243 845.9 519 76.5
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.8e-243 845.1 472 84.7
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 4.8e-243 844.3 522 75.7
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 8.3e-243 843.6 518 76.3
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 8.3e-243 843.6 518 76.3
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 8.3e-243 843.6 530 74.9
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 1.1e-242 843.2 519 76.5
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 1.1e-242 843.2 519 76.5
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 2.4e-242 842.0 519 76.3
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 2.4e-242 842.0 522 75.9
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 4.1e-242 841.3 519 76.3
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 8.5e-240 833.6 520 76.7
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 2.5e-239 832.0 492 79.5
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 3.2e-239 831.6 466 83.7
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 7.2e-239 830.5 522 75.3
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 1.2e-238 829.7 519 75.0
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 1.6e-238 829.3 524 76.1
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 6.1e-238 827.4 519 75.0
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 4.0e-237 824.7 516 76.9
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 6.8e-237 823.9 519 75.1
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 1.5e-236 822.8 520 74.8
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 2.6e-236 822.0 469 82.7
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 4.4e-236 821.2 520 76.2
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 7.5e-236 820.5 518 75.9
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 1.8e-234 815.8 515 75.7
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.4e-234 815.5 515 75.1
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 2.7e-233 812.0 516 75.2
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 3.5e-233 811.6 520 75.4
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 1.0e-232 810.1 517 74.9
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.0e-232 810.1 520 75.4
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 1.3e-232 809.7 517 75.0
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 6.6e-232 807.4 519 74.6
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 9.5e-231 803.5 521 73.3
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 2.1e-230 802.4 464 80.6
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 2.6e-228 795.4 553 70.5
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 1.7e-227 792.7 550 70.7
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 4.9e-227 791.2 474 78.1
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 6.3e-227 790.8 573 67.9
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 5.4e-226 787.7 467 79.0
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 7.0e-226 787.3 470 78.3
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 5.9e-225 784.3 520 73.7
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 1.7e-224 782.7 519 72.6
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 1.5e-223 779.6 490 76.5
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 9.5e-223 776.9 495 75.4
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 4.7e-222 774.6 495 75.2
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 3.1e-221 771.9 561 68.8
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 3.1e-221 771.9 520 71.7
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 3.0e-216 755.4 518 69.5
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.9e-215 752.7 520 70.4
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 3.7e-211 738.4 540 67.2
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.1e-210 736.9 520 68.7
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 3.9e-208 728.4 519 69.2
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 1.1e-202 710.3 505 71.5
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 7.3e-191 671.0 380 83.7
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 3.5e-185 652.1 481 66.7
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 2.5e-183 646.0 377 78.8
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 3.3e-183 645.6 561 59.4
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 1.3e-182 643.7 382 78.8
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 1.0e-176 624.0 480 65.6
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 9.0e-173 610.9 446 63.5
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 2.2e-171 606.3 481 59.7
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 3.5e-161 572.4 473 57.9
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 4.6e-153 545.4 470 55.7
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 1.8e-144 516.9 352 71.0
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 1.6e-132 477.2 289 79.6
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 3.2e-130 469.5 293 76.5
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 2.7e-129 466.5 286 76.6
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 8.0e-129 464.9 288 78.1
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 5.7e-127 458.8 265 78.5
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 2.2e-126 456.8 291 74.6
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 1.6e-105 387.5 246 72.0
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 5.6e-98 362.5 244 71.3
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.6e-79 300.4 204 70.1
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 2.6e-55 220.7 501 31.1
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 3.4e-55 220.3 131 76.3
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 2.1e-52 211.1 488 31.6
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.1e-42 178.7 218 49.1
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 7.7e-39 166.0 153 51.6
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 5.5e-37 159.8 109 69.7
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 1.0e-27 129.0 86 70.9
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.1e-21 109.0 142 49.3
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 3.2e-21 107.5 58 81.0
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 1.8e-19 101.7 60 73.3
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 1.3e-17 95.5 149 36.9
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.2e-13 80.9 175 36.6
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 2.0e-07 61.6 37 73.0
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 3.5e-07 60.8 47 59.6


User provided reference genes

Program Settings