Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 1.2e-278 962.6 520 100.0
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.8e-158 562.8 512 64.5
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 2.4e-149 533.1 521 62.6
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.2e-148 530.8 495 63.0
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 5.4e-117 425.6 480 59.0
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 8.9e-112 408.3 512 53.7
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 8.6e-107 391.7 529 51.6
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 4.0e-104 382.9 515 50.7
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.0e-99 368.2 521 51.1
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 1.0e-99 368.2 523 47.0
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 3.1e-96 356.7 529 49.1
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 6.8e-96 355.5 505 49.7
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 6.8e-96 355.5 510 51.6
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.3e-94 351.3 512 50.2
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 4.9e-94 349.4 513 47.0
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.7e-91 340.9 514 49.4
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 8.6e-91 338.6 431 54.8
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 3.3e-90 336.7 511 48.1
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 7.3e-90 335.5 517 47.0
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 9.5e-90 335.1 517 47.2
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.6e-89 334.3 517 47.0
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.8e-89 333.6 513 47.6
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 8.1e-89 332.0 514 45.5
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 8.1e-89 332.0 534 44.8
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 1.1e-88 331.6 514 46.7
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 6.8e-88 328.9 494 48.6
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 4.4e-87 326.2 513 48.3
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.2e-86 323.9 516 46.1
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.9e-85 320.9 516 45.0
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 7.1e-85 318.9 514 46.1
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 2.1e-84 317.4 526 44.9
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.5e-84 316.6 524 45.0
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 6.0e-84 315.8 506 48.4
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 1.7e-83 314.3 513 47.0
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.1e-83 312.8 516 45.3
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.9e-82 310.8 498 47.2
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.9e-82 310.8 516 44.8
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.6e-81 307.8 515 46.8
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.6e-81 307.8 506 45.8
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 2.1e-81 307.4 449 50.3
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 3.6e-81 306.6 518 46.5
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.1e-80 305.1 513 44.8
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 4.0e-80 303.1 525 44.6
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 5.2e-80 302.8 516 44.8
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 6.8e-80 302.4 519 46.8
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 2.6e-79 300.4 507 47.5
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.7e-78 297.7 522 44.8
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 2.2e-78 297.4 535 43.0
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.9e-78 296.2 506 44.3
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 1.9e-77 294.3 531 46.9
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 2.1e-76 290.8 503 45.7
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 6.0e-76 289.3 530 42.6
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 7.8e-76 288.9 520 43.5
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.3e-75 287.3 536 41.6
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 8.7e-75 285.4 501 45.7
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.9e-74 284.3 517 42.7
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 5.6e-74 282.7 509 41.3
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 1.6e-73 281.2 496 41.5
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 6.2e-73 279.3 515 39.2
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 8.1e-73 278.9 520 42.5
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 4.0e-72 276.6 509 41.3
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 5.3e-72 276.2 517 39.1
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 5.3e-72 276.2 520 42.7
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 6.9e-72 275.8 521 43.0
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 1.2e-71 275.0 509 42.8
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 3.8e-70 270.0 488 42.8
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 8.4e-70 268.9 517 40.0
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.4e-69 266.2 517 44.1
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 9.3e-69 265.4 502 43.2
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.6e-68 264.6 522 39.8
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 3.5e-68 263.5 513 41.5
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 4.6e-68 263.1 523 42.6
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 6.0e-68 262.7 524 39.9
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 6.0e-68 262.7 440 48.0
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.3e-67 261.5 539 42.3
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 1.7e-67 261.2 540 40.9
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 6.6e-67 259.2 518 41.1
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.4e-64 251.5 524 38.4
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 3.1e-64 250.4 511 42.1
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 4.0e-64 250.0 517 40.4
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 4.0e-64 250.0 500 42.2
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 4.0e-64 250.0 433 41.8
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 6.9e-64 249.2 504 39.9
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 7.6e-63 245.7 523 40.9
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.7e-62 244.6 530 40.6
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 8.4e-62 242.3 369 44.4
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.9e-61 241.1 513 39.6
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 4.2e-61 240.0 423 44.2
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 5.5e-61 239.6 510 45.3
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 6.0e-60 236.1 441 44.0
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.1e-58 231.9 509 38.5
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.5e-58 230.7 516 40.1
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 4.3e-58 229.9 521 39.0
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.1e-57 227.6 444 44.1
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 1.1e-56 225.3 524 37.0
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.1e-56 225.3 481 37.2
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.2e-55 221.9 537 38.4
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.5e-55 221.5 540 39.6
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.0e-55 221.1 497 39.4
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 2.9e-54 217.2 470 41.1
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 3.8e-54 216.9 540 40.0
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 1.9e-53 214.5 463 36.7
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 3.5e-52 210.3 458 38.9
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 7.9e-52 209.1 474 39.7
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.5e-50 204.9 507 37.7
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.5e-50 204.9 525 34.3
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 9.6e-50 202.2 511 37.8
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.3e-49 201.8 447 38.0
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.8e-48 198.0 412 37.6
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 4.1e-48 196.8 447 37.4
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 6.9e-48 196.1 438 38.1
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 7.6e-47 192.6 448 40.2
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 6.5e-46 189.5 445 36.2
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 8.5e-46 189.1 441 39.5
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.4e-45 188.3 445 36.6
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 7.2e-45 186.0 443 35.9
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.2e-44 185.3 453 38.2
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 2.1e-44 184.5 450 38.9
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 1.8e-43 181.4 464 37.3
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 2.3e-43 181.0 261 48.7
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 3.0e-43 180.6 418 34.7
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 9.7e-42 175.6 417 36.5
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.7e-41 173.7 482 33.8
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 4.1e-40 170.2 402 39.3
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.2e-39 168.7 512 32.4
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 3.4e-39 167.2 521 32.8
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 7.7e-39 166.0 445 36.2
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.0e-38 165.6 488 32.0
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.9e-38 164.1 428 33.6
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 3.2e-37 160.6 353 40.5
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 7.2e-37 159.5 507 31.6
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 9.4e-37 159.1 430 37.0
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 5.1e-35 153.3 412 34.0
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 7.4e-34 149.4 364 37.9
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 1.7e-33 148.3 359 36.2
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 6.3e-33 146.4 412 33.0
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 8.2e-33 146.0 412 33.0
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 2.1e-28 131.3 441 30.2
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 2.7e-28 131.0 114 61.4
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 2.3e-27 127.9 424 31.8
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 6.7e-27 126.3 387 30.2
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.1e-26 125.6 468 28.2
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.7e-25 121.7 369 32.0
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 2.2e-25 121.3 293 37.2
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.4e-24 118.6 130 53.1
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 8.5e-22 109.4 456 30.3
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 4.2e-21 107.1 576 28.5
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 3.6e-20 104.0 234 35.5
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.7e-20 103.6 184 37.5
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 4.7e-20 103.6 140 55.0
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 5.2e-19 100.1 524 27.9
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 4.4e-18 97.1 146 43.8
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 1.3e-17 95.5 225 38.7
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 3.7e-17 94.0 132 47.7
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 1.8e-16 91.7 222 35.6
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 5.3e-16 90.1 185 36.2
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.0e-14 85.9 106 43.4
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.0e-11 75.9 152 35.5
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.4e-11 75.5 114 42.1
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 2.0e-10 71.6 59 57.6
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.0e-10 71.6 203 30.5
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 2.2e-09 68.2 173 37.6
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 4.8e-09 67.0 106 35.8
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.1e-08 65.9 107 38.3
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.1e-08 65.9 107 38.3
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.8e-08 65.1 50 62.0
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 3.1e-08 64.3 100 40.0
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 4.1e-08 63.9 51 56.9
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 2.0e-07 61.6 67 47.8
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 2.0e-07 61.6 101 44.6
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.9e-06 57.8 346 27.7
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 5.0e-06 57.0 196 31.6


User provided reference genes

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