Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08920 Selenicereus undatus HOM05D006517 ORTHO05D007886 1.4e-153 546.2 260 100.0
EL10Ac8g18944 Beta vulgaris HOM05D006517 ORTHO05D007886 6.6e-108 394.4 276 71.7
AUR62025324 Chenopodium quinoa HOM05D006517 ORTHO05D007886 3.6e-106 388.7 279 68.8
Sc18g0002960 Simmondsia chinensis HOM05D006517 ORTHO05D007886 6.6e-100 367.9 275 67.3
AUR62028338 Chenopodium quinoa HOM05D000417 ORTHO05D007886 2.4e-89 332.8 275 62.9
TAR383G1010 Trochodendron aralioides HOM05D006517 ORTHO05D007886 1.1e-86 323.9 283 58.0
Gohir.D08G268100 Gossypium hirsutum HOM05D006517 ORTHO05D007886 3.2e-86 322.4 284 57.4
Gorai.004G285800 Gossypium raimondii HOM05D006517 ORTHO05D007886 3.2e-86 322.4 284 57.4
GSVIVG01000273001 Vitis vinifera HOM05D006517 ORTHO05D007886 7.1e-86 321.2 288 58.3
Atru.chr7.1806 Acer truncatum HOM05D006517 ORTHO05D007886 1.2e-85 320.5 285 58.2
QL11p003516 Quercus lobata HOM05D006517 ORTHO05D007886 1.6e-85 320.1 283 59.0
CiPaw.03G198900 Carya illinoinensis HOM05D006517 ORTHO05D007886 7.9e-85 317.8 283 58.3
Potri.018G047000 Populus trichocarpa HOM05D006517 ORTHO05D007886 1.3e-84 317.0 288 57.6
Migut.J00866 Erythranthe guttata HOM05D006517 ORTHO05D007886 3.0e-84 315.8 284 56.7
COL.COLO4_21178 Corchorus olitorius HOM05D006517 ORTHO05D007886 5.1e-84 315.1 281 57.3
HanXRQChr09g0258421 Helianthus annuus HOM05D006517 ORTHO05D007886 1.1e-83 313.9 274 59.5
Dinv42443 Davidia involucrata HOM05D006517 ORTHO05D007886 1.9e-83 313.2 282 57.8
Lj4g0027818 Lotus japonicus HOM05D006517 ORTHO05D007886 1.3e-82 310.5 283 57.2
Nitab4.5_0000987g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 1.6e-82 310.1 284 55.6
Oeu000272.2 Olea europaea HOM05D006517 ORTHO05D007886 8.2e-82 307.8 285 56.5
Gohir.A08G246900 Gossypium hirsutum HOM05D006517 ORTHO05D007886 1.1e-81 307.4 284 56.0
Lsat_1_v5_gn_8_118080 Lactuca sativa HOM05D006517 ORTHO05D007886 1.1e-81 307.4 275 58.9
CSS0016512 Camellia sinensis var. sinensis HOM05D006517 ORTHO05D007886 1.4e-81 307.0 284 56.3
Medtr4g124370 Medicago truncatula HOM05D006517 ORTHO05D007886 4.0e-81 305.4 285 56.8
Manes.03G055100 Manihot esculenta HOM05D006517 ORTHO05D007886 1.5e-80 303.5 279 57.7
Cfa010680 Carpinus fangiana HOM05D006517 ORTHO05D007886 2.6e-80 302.8 283 56.2
Duzib150G1397 Durio zibethinus HOM05D006517 ORTHO05D007886 2.6e-80 302.8 285 55.1
Duzib168G1027 Durio zibethinus HOM05D006517 ORTHO05D007886 3.4e-80 302.4 282 56.0
ClCG03G014700 Citrullus lanatus HOM05D006517 ORTHO05D007886 4.5e-80 302.0 270 56.7
Prupe.7G189300 Prunus persica HOM05D006517 ORTHO05D007886 5.8e-80 301.6 280 58.2
Lalb_Chr13g0299091 Lupinus albus HOM05D006517 ORTHO05D007886 1.0e-79 300.8 282 56.0
Ca_21351_v3 Cicer arietinum L. HOM05D006517 ORTHO05D007886 4.9e-79 298.5 283 56.2
THA.LOC104804445 Tarenaya hassleriana HOM05D006517 ORTHO05D007886 4.9e-79 298.5 281 55.5
Eucgr.C00754 Eucalyptus grandis HOM05D006517 ORTHO05D007886 6.5e-79 298.1 277 53.8
Glyma.13G116000 Glycine max HOM05D006517 ORTHO05D007886 6.5e-79 298.1 283 56.2
Ciclev10009053m.g Citrus clementina HOM05D006517 ORTHO05D007886 1.1e-78 297.4 285 53.7
Phvul.003G125800 Phaseolus vulgaris HOM05D006517 ORTHO05D007886 1.9e-78 296.6 273 57.9
PGR124G0001 Punica granatum HOM05D006517 ORTHO05D007886 1.9e-78 296.6 277 55.2
PGR142G0057 Punica granatum HOM05D006517 ORTHO05D007886 1.9e-78 296.6 277 55.2
SGA_v2.0_scaffold318G48507 Striga asiatica HOM05D006517 ORTHO05D007886 1.9e-78 296.6 282 56.7
RcHm_v2.0_Chr2g0096541 Rosa chinensis HOM05D006517 ORTHO05D007886 2.5e-78 296.2 279 56.6
CsaV3_1G041470 Cucumis sativus L. HOM05D006517 ORTHO05D007886 3.2e-78 295.8 273 54.9
CAN.G55.2 Capsicum annuum HOM05D006517 ORTHO05D007886 7.1e-78 294.7 285 54.0
TPR.G12541 Trifolium pratense HOM05D006517 ORTHO05D007886 7.1e-78 294.7 280 57.1
Glyma.17G043800 Glycine max HOM05D006517 ORTHO05D007886 2.1e-77 293.1 278 54.7
Sed0014627 Sechium edule HOM05D006517 ORTHO05D007886 6.0e-77 291.6 272 56.6
Thecc.09G067300 Theobroma cacao HOM05D006517 ORTHO05D007886 1.0e-76 290.8 282 55.0
MBI13_g05966_MAGBIO Magnolia biondii HOM05D006517 ORTHO05D007886 1.3e-76 290.4 288 52.1
unitig_26.g9120 Utricularia gibba HOM05D006517 ORTHO05D007886 3.9e-76 288.9 283 53.4
ATR0006G021 Amborella trichopoda HOM05D006517 ORTHO05D007886 8.7e-76 287.7 287 53.3
Potri.006G217100 Populus trichocarpa HOM05D006517 ORTHO05D007886 1.9e-75 286.6 283 54.8
PSO541G2149 Papaver somniferum HOM05D006517 ORTHO05D007886 1.3e-74 283.9 283 54.1
PSO675G5415 Papaver somniferum HOM05D006517 ORTHO05D007886 4.8e-74 282.0 283 54.1
CDE05G1274 Ceratophyllum demersum HOM05D006517 ORTHO05D007886 1.1e-73 280.8 285 51.6
MD15G1225700 Malus domestica HOM05D006517 ORTHO05D007886 1.4e-73 280.4 282 54.6
MELO3C015558.2 Cucumis melo HOM05D006517 ORTHO05D007886 2.0e-72 276.6 274 52.9
Nitab4.5_0005239g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 2.0e-72 276.6 281 52.0
FAN23G1398 Fragaria x ananassa HOM05D006517 ORTHO05D007886 5.9e-72 275.0 279 54.1
Aqoxy7G00916 Aquilegia oxysepala HOM05D006517 ORTHO05D007886 1.0e-71 274.2 285 52.3
ECA232G0292 Erigeron canadensis HOM05D001622 ORTHO05D002989 1.1e-70 270.8 269 55.4
Zm00001eb327610 Zea mays HOM05D006517 ORTHO05D007886 4.6e-69 265.4 279 49.5
CANSAT56G3804 Cannabis sativa HOM05D006517 ORTHO05D007886 1.0e-68 264.2 280 51.4
FvH4_1g09680 Fragaria vesca HOM05D006517 ORTHO05D007886 2.3e-68 263.1 280 52.9
FAN26G1998 Fragaria x ananassa HOM05D006517 ORTHO05D007886 2.3e-68 263.1 280 52.9
arahy.Tifrunner.gnm1.ann1.2S6U7G Arachis hypogaea HOM05D006517 ORTHO05D007886 2.2e-66 256.5 260 53.5
CANSAT56G0784 Cannabis sativa HOM05D006517 ORTHO05D007886 2.2e-66 256.5 281 50.5
MD02G1105800 Malus domestica HOM05D006517 ORTHO05D007886 1.8e-65 253.4 280 50.0
Nn8g38504 Nelumbo nucifera HOM05D006517 ORTHO05D007886 4.1e-65 252.3 258 51.9
VMungo1215G1783 Vigna mungo HOM05D006517 ORTHO05D007886 6.9e-65 251.5 273 50.5
Os07g0618600 Oryza sativa ssp. japonica HOM05D006517 ORTHO05D007886 2.6e-64 249.6 289 47.4
Sabra06G0167400 Salix brachista HOM05D006517 ORTHO05D007886 3.4e-64 249.2 299 47.5
Oeu000950.1 Olea europaea HOM05D006517 ORTHO05D007886 6.5e-63 245.0 247 55.5
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 1.9e-62 243.4 207 62.3
Duzib187G0844 Durio zibethinus HOM05D006517 ORTHO05D007886 7.2e-62 241.5 285 48.4
SalBow6G1494 Salvia bowleyana HOM05D006517 ORTHO05D007886 1.6e-61 240.4 235 55.7
Actinidia39602 Actinidia chinensis HOM05D006517 ORTHO05D007886 5.1e-60 235.3 238 54.6
Actinidia39601 Actinidia chinensis HOM05D006517 ORTHO05D007886 8.8e-60 234.6 235 54.5
Mapoly0086s0040 Marchantia polymorpha HOM05D006517 ORTHO05D007886 6.3e-58 228.4 291 41.6
Psat4g020160 Pisum sativum HOM05D006517 ORTHO05D007886 8.2e-58 228.0 238 52.5
FAN26G3113 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.1e-57 227.6 280 48.6
SGA_v2.0_scaffold31G12706 Striga asiatica HOM05D006517 ORTHO05D007886 1.7e-55 220.3 236 53.0
arahy.Tifrunner.gnm1.ann1.0410DC Arachis hypogaea HOM05D006517 ORTHO05D007886 9.4e-54 214.5 233 51.1
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 9.4e-54 214.5 253 48.6
SMO117G0175 Selaginella moellendorffii HOM05D006517 ORTHO05D007886 2.1e-53 213.4 298 41.3
DCAR_010521 Daucus carota HOM05D006517 ORTHO05D007886 1.3e-50 204.1 296 43.9
FAN28G2617 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.7e-47 193.7 280 44.3
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 3.8e-47 192.6 241 47.7
FAN23G2301 Fragaria x ananassa HOM05D006517 ORTHO05D007886 3.2e-46 189.5 279 44.1
HPP92_002241 Vanilla planifolia HOM05D000872 ORTHO05D000777 2.7e-45 186.4 232 47.0
Sp4g06310 Schrenkiella parvula HOM05D006517 ORTHO05D007886 1.8e-44 183.7 192 53.1
Pp3c18_11010 Physcomitrium patens HOM05D006517 ORTHO05D007886 2.3e-44 183.3 286 37.1
Aa31LG5G9580 Aethionema arabicum HOM05D006517 ORTHO05D007886 4.4e-43 179.1 204 49.0
AL4G18760 Arabidopsis lyrata HOM05D006517 ORTHO05D007886 2.2e-42 176.8 194 52.6
BraA04t17607Z Brassica rapa HOM05D006517 ORTHO05D007886 2.2e-42 176.8 157 60.5
A04p20280 Brassica napus HOM05D006517 ORTHO05D007886 4.8e-42 175.6 156 58.3
C04p55990 Brassica napus HOM05D006517 ORTHO05D007886 2.4e-41 173.3 157 59.2
BolC4t27132H Brassica oleracea HOM05D006517 ORTHO05D007886 2.4e-41 173.3 157 59.2
CARHR115040 Cardamine hirsuta HOM05D006517 ORTHO05D007886 2.4e-41 173.3 190 52.1
Solyc06g031680.2 Solanum lycopersicum HOM05D006517 ORTHO05D007886 5.3e-41 172.2 163 50.9
Carub.0004s0605 Capsella rubella HOM05D006517 ORTHO05D007886 9.1e-41 171.4 193 49.2
CBR_g36802 Chara braunii HOM05D006517 ORTHO05D007886 5.9e-40 168.7 287 38.3
AT2G26210 Arabidopsis thaliana HOM05D006517 ORTHO05D007886 1.3e-39 167.5 193 49.7
BcaNung07167 Brassica carinata HOM05D006517 ORTHO05D007886 1.2e-37 161.0 164 55.5
Rhsim05G0081000 Rhododendron simsii HOM05D006517 ORTHO05D007886 2.1e-37 160.2 265 40.4
Sopen06g010170 Solanum pennellii HOM05D006517 ORTHO05D007886 2.7e-37 159.8 140 54.3
Cc09_g04380 Coffea canephora HOM05D006517 ORTHO05D007886 2.3e-36 156.8 131 61.8
Cpa.g.sc82.30 Carica papaya HOM05D006517 ORTHO05D007886 5.2e-36 155.6 96 74.0
Cc09_g04390 Coffea canephora HOM05D006517 ORTHO05D007886 1.5e-35 154.1 137 56.9
AagrBONN_evm.TU.Sc2ySwM_362.2898 Anthoceros agrestis HOM05D006517 ORTHO05D007886 4.4e-35 152.5 222 39.2
Solyc06g031690.4 Solanum lycopersicum HOM05D006517 ORTHO05D007886 7.5e-35 151.8 94 75.5
SEGI_24061 Sequoiadendron giganteum HOM05D006517 ORTHO05D007886 2.0e-32 143.7 173 47.4
Cpa.g.sc82.25 Carica papaya HOM05D006517 ORTHO05D007886 8.0e-29 131.7 70 80.0
Thhalv10002200m.g Eutrema salsugineum HOM05D006517 ORTHO05D007886 2.8e-26 123.2 222 39.2
FAN19G3155 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.9e-22 110.5 215 39.1
vmacro13145 Vaccinium macrocarpon HOM05D006517 ORTHO05D007886 6.4e-18 95.5 200 38.0
Medtr5g081760 Medicago truncatula HOM05D006517 ORTHO05D007886 9.2e-17 91.7 81 56.8
Medtr4g036440 Medicago truncatula HOM05D006517 ORTHO05D007886 1.6e-13 80.9 75 56.0
Medtr8g098885 Medicago truncatula HOM05D006517 ORTHO05D007886 1.6e-13 80.9 49 73.5
Peaxi162Scf00658g00031 Petunia axillaris HOM05D000115 ORTHO05D000464 3.6e-13 79.7 167 32.9
Lsat_1_v5_gn_5_30201 Lactuca sativa HOM05D006517 ORTHO05D007886 2.7e-08 63.5 95 41.1
TWI73G0176 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 6.0e-08 62.4 99 33.3
Potri.004G064400 Populus trichocarpa HOM05D000088 ORTHO05D003056 7.8e-08 62.0 93 32.3
Ca_00492_v3 Cicer arietinum L. HOM05D000088 ORTHO05D003056 1.3e-07 61.2 106 31.1
Thecc.06G161000 Theobroma cacao HOM05D000088 ORTHO05D003056 1.3e-07 61.2 91 34.1
TWI09G1601 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 1.3e-07 61.2 116 31.0
Sabra04G0042700 Salix brachista HOM05D000088 ORTHO05D003056 3.0e-07 60.1 83 34.9
Lj4g0011716 Lotus japonicus HOM05D000903 ORTHO05D000731 3.9e-07 59.7 70 38.6
Lj6g0019783 Lotus japonicus HOM05D000088 ORTHO05D003056 6.6e-07 58.9 95 29.5
Cfa025238 Carpinus fangiana HOM05D003211 ORTHO05D003621 8.6e-07 58.5 60 41.7
TAR633G2105 Trochodendron aralioides HOM05D007663 ORTHO05D009455 8.6e-07 58.5 85 32.9
BcaB04g18832 Brassica carinata HOM05D000903 ORTHO05D000731 1.1e-06 58.2 78 34.6
BcaC01g03940 Brassica carinata HOM05D000903 ORTHO05D000731 1.1e-06 58.2 78 34.6
C03p46870 Brassica napus HOM05D000903 ORTHO05D000731 1.1e-06 58.2 78 34.6
BolC3t16953H Brassica oleracea HOM05D000903 ORTHO05D000731 1.1e-06 58.2 78 34.6
Glyma.13G114800 Glycine max HOM05D000903 ORTHO05D000731 1.5e-06 57.8 140 29.3
SGA_v2.0_scaffold4G02095 Striga asiatica HOM05D000903 ORTHO05D000731 1.5e-06 57.8 93 37.6
Haze_16131 Corylus avellana HOM05D000903 ORTHO05D000731 1.9e-06 57.4 72 36.1
Cpa.g.sc25.186 Carica papaya HOM05D000903 ORTHO05D000731 2.5e-06 57.0 81 35.8
Glyma.17G045200 Glycine max HOM05D000903 ORTHO05D000731 2.5e-06 57.0 141 29.8
VMungo0625G0001 Vigna mungo HOM05D000088 ORTHO05D003056 2.5e-06 57.0 124 26.6
BcaB04g18834 Brassica carinata HOM05D000903 ORTHO05D000731 3.3e-06 56.6 78 35.9
A03p38730 Brassica napus HOM05D000903 ORTHO05D000731 3.3e-06 56.6 78 33.3
BraA03t13021Z Brassica rapa HOM05D000903 ORTHO05D000731 3.3e-06 56.6 78 33.3
Sc18g0002870 Simmondsia chinensis HOM05D000903 ORTHO05D000731 3.3e-06 56.6 69 36.2
Atru.chr1.4138 Acer truncatum HOM05D000903 ORTHO05D000731 4.3e-06 56.2 71 36.6
BcaNung04872 Brassica carinata HOM05D000088 ORTHO05D003056 4.3e-06 56.2 93 32.3
Cfa003465 Carpinus fangiana HOM05D000903 ORTHO05D000731 4.3e-06 56.2 72 36.1
Phvul.006G169700 Phaseolus vulgaris HOM05D000088 ORTHO05D003056 4.3e-06 56.2 95 28.4
TPR.G4487 Trifolium pratense HOM05D000088 ORTHO05D003056 5.6e-06 55.8 70 38.6
AL3G26590 Arabidopsis lyrata HOM05D000903 ORTHO05D000731 7.3e-06 55.5 74 36.5
Nn6g35723 Nelumbo nucifera HOM05D000903 ORTHO05D000731 7.3e-06 55.5 81 35.8
THA.LOC104816059 Tarenaya hassleriana HOM05D000903 ORTHO05D000731 7.3e-06 55.5 79 36.7
MSTRG.10916 Avicennia marina HOM05D000903 ORTHO05D000731 9.5e-06 55.1 95 36.8
Ciclev10027324m.g Citrus clementina HOM05D000903 ORTHO05D000731 9.5e-06 55.1 67 38.8
Cc04_g00770 Coffea canephora HOM05D000903 ORTHO05D000731 9.5e-06 55.1 79 34.2
MELO3C002689.2 Cucumis melo HOM05D000088 ORTHO05D003056 9.5e-06 55.1 95 31.6
Lj4g0014945 Lotus japonicus HOM05D000088 ORTHO05D004426 9.5e-06 55.1 58 41.4
Phvul.003G127000 Phaseolus vulgaris HOM05D000903 ORTHO05D000731 9.5e-06 55.1 141 29.1
Sp7g17660 Schrenkiella parvula HOM05D000088 ORTHO05D003056 9.5e-06 55.1 70 38.6
SGA_v2.0_scaffold123G33471 Striga asiatica HOM05D000088 ORTHO05D003056 9.5e-06 55.1 80 38.8
SGA_v2.0_scaffold87G27135 Striga asiatica HOM05D002893 ORTHO05D008562 9.5e-06 55.1 84 38.1


User provided reference genes

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