Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 5.3e-202 707.6 393 100.0
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 6.3e-118 428.3 306 81.0
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 6.5e-115 418.3 306 77.5
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 1.2e-113 414.1 306 78.4
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 1.0e-112 411.0 307 81.1
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 1.0e-112 411.0 307 74.9
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.8e-112 410.2 313 79.6
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 3.0e-112 409.5 307 80.8
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 3.0e-112 409.5 306 81.0
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 2.5e-111 406.4 307 73.9
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 9.7e-111 404.4 308 77.9
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 2.8e-110 402.9 306 76.8
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.1e-109 401.0 306 78.1
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 1.4e-109 400.6 308 77.3
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 3.1e-109 399.4 307 66.1
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 2.6e-108 396.4 307 75.9
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 3.4e-108 396.0 307 73.6
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 3.4e-108 396.0 306 79.4
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 4.5e-108 395.6 307 76.9
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 4.5e-108 395.6 307 70.7
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.2e-107 393.3 306 75.5
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 3.8e-107 392.5 307 78.5
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 6.5e-107 391.7 307 75.9
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 1.4e-106 390.6 307 71.7
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.5e-106 389.8 306 75.2
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 5.5e-106 388.7 298 65.1
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 7.2e-106 388.3 306 69.9
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 9.4e-106 387.9 315 64.1
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.6e-105 387.1 315 65.1
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 2.7e-105 386.3 309 64.1
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 3.6e-105 386.0 307 64.2
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.6e-105 385.6 321 69.2
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 7.9e-105 384.8 308 75.0
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 1.0e-104 384.4 307 78.2
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 5.1e-104 382.1 307 75.9
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 6.7e-104 381.7 306 73.2
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 2.0e-103 380.2 310 74.5
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 2.6e-103 379.8 310 69.0
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.6e-103 379.8 333 74.8
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 9.7e-103 377.9 318 73.9
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.3e-102 377.5 306 69.0
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 4.8e-102 375.6 310 66.1
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 6.3e-102 375.2 306 72.5
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.4e-101 374.0 308 70.1
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.8e-101 373.6 307 72.0
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 1.8e-101 373.6 312 73.7
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.8e-101 373.6 313 74.4
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.4e-101 373.2 310 65.5
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 4.1e-101 372.5 311 64.0
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 4.1e-101 372.5 310 65.8
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 9.1e-101 371.3 310 65.5
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 9.1e-101 371.3 308 73.7
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.2e-100 370.9 308 74.7
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.5e-100 370.5 311 63.0
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 2.6e-100 369.8 311 63.0
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 7.7e-100 368.2 310 64.8
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.7e-99 367.1 310 67.7
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 2.2e-99 366.7 311 62.7
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 2.5e-98 363.2 313 71.9
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 7.2e-98 361.7 310 69.0
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 9.4e-98 361.3 307 63.2
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 6.1e-97 358.6 308 66.9
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 7.9e-97 358.2 321 67.3
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.4e-96 357.5 283 78.8
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.8e-96 357.1 319 69.0
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.3e-96 356.7 328 67.1
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 2.3e-96 356.7 309 72.5
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-95 354.4 340 68.5
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 2.6e-95 353.2 313 68.7
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 9.7e-95 351.3 307 61.2
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 2.2e-94 350.1 312 63.1
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 2.8e-94 349.7 306 71.2
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 3.7e-94 349.4 309 60.5
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 4.8e-94 349.0 321 69.2
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.4e-93 347.4 310 60.3
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 2.4e-93 346.7 265 77.0
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 4.1e-93 345.9 289 75.8
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 5.3e-93 345.5 307 73.6
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.3e-93 345.5 309 60.2
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 9.1e-93 344.7 307 68.4
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 1.2e-92 344.4 343 55.7
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 2.0e-92 343.6 306 61.4
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 2.6e-92 343.2 306 71.2
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 4.5e-92 342.4 311 58.8
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 1.3e-91 340.9 274 73.7
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.3e-91 340.9 309 59.2
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 2.9e-91 339.7 319 65.8
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 6.5e-91 338.6 358 58.4
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 6.5e-91 338.6 358 58.4
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 2.5e-90 336.7 307 60.9
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 1.6e-89 334.0 281 74.0
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 2.1e-89 333.6 307 58.0
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 2.0e-87 327.0 323 60.4
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.1e-85 319.3 286 72.7
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 9.1e-85 318.2 306 53.6
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 5.9e-84 315.5 258 78.7
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.0e-83 314.7 352 58.5
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.0e-83 314.7 352 58.5
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.7e-83 313.9 257 77.0
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.1e-82 311.2 308 55.2
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 9.4e-82 308.1 313 64.2
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 3.0e-80 303.1 311 54.7
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 1.5e-79 300.8 340 50.0
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.8e-78 296.6 232 81.0
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 2.8e-78 296.6 258 73.3
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 3.7e-78 296.2 269 58.4
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.4e-77 294.3 213 79.3
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.4e-77 293.5 232 80.6
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 3.1e-77 293.1 243 76.5
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.2e-74 283.1 264 58.7
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 1.0e-72 278.1 213 77.5
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 6.8e-72 275.4 285 53.7
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 3.1e-69 266.5 234 61.5
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 4.1e-69 266.2 240 75.0
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 2.7e-68 263.5 234 76.1
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.3e-67 260.4 233 75.5
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 2.9e-67 260.0 298 50.7
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.6e-65 254.2 189 86.8
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 2.8e-65 253.4 234 59.4
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 1.3e-62 244.6 250 54.0
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 8.3e-62 241.9 239 55.2
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 7.8e-60 235.3 242 71.5
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.0e-59 235.0 214 72.4
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 1.3e-59 234.6 296 49.7
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.1e-58 231.5 245 64.9
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 6.2e-57 225.7 234 69.2
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 8.9e-56 221.9 126 81.7
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.7e-54 216.5 245 66.5
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 2.1e-49 200.7 244 51.2
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 8.3e-46 188.7 236 50.4
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 8.3e-46 188.7 236 50.4
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 4.1e-45 186.4 296 41.2
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 3.5e-44 183.3 317 47.6
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.2e-41 174.9 295 49.8
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 8.9e-40 168.7 286 40.6
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.3e-38 164.9 245 52.7
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.7e-38 164.5 146 72.6
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 6.0e-36 156.0 149 75.8
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 7.3e-34 149.1 113 57.5
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 6.2e-33 146.0 163 54.0
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 2.4e-32 144.1 246 41.5
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 9.0e-32 142.1 74 81.1
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-31 141.4 181 44.8
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 2.6e-31 140.6 78 74.4
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 2.8e-25 120.6 74 74.3
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.8e-25 120.6 157 63.1
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.1e-25 119.0 119 56.3
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 1.3e-22 111.7 58 77.6
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.2e-20 105.1 93 61.3
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 1.6e-17 94.7 126 34.9
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 1.4e-16 91.7 47 78.7
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 2.6e-15 87.4 130 41.5
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 3.2e-13 80.5 92 45.7
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.0e-11 75.5 87 56.3
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 1.3e-11 75.1 70 61.4
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 2.1e-09 67.8 44 70.5
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.1e-09 67.8 44 70.5
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 1.7e-06 58.2 100 36.0


User provided reference genes

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