Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1775.4 863 100.0
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1403.3 863 78.6
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1402.1 863 78.6
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1402.1 882 76.5
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1394.0 874 76.9
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1376.7 865 76.6
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1268.8 863 70.8
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1264.2 863 71.1
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1260.0 866 70.3
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1258.8 866 70.2
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1252.7 866 70.4
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1252.3 871 69.6
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1250.3 863 69.8
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1248.0 866 70.0
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1245.7 863 70.7
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1244.6 863 69.3
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1244.2 863 70.5
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1243.4 865 69.9
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1241.9 866 70.1
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1241.5 863 70.6
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1241.1 863 70.3
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1239.9 863 70.6
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1238.4 863 70.3
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1237.6 869 68.9
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1236.9 875 68.6
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1236.9 865 69.9
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1236.5 866 68.9
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1235.3 863 69.9
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1234.2 861 69.0
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1233.8 869 68.8
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1233.0 866 68.8
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1233.0 867 69.7
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1231.9 865 68.1
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1229.9 864 69.1
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1229.9 866 69.5
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1227.6 867 69.8
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1227.2 863 68.9
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1224.5 863 68.8
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1224.2 866 68.7
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1219.9 867 68.5
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1219.1 864 68.4
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1218.8 863 68.1
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1218.0 868 68.4
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1218.0 866 68.5
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1217.6 867 67.7
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1217.6 866 68.6
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1216.8 866 67.9
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1216.1 870 67.7
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1213.4 867 68.6
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1213.4 864 67.6
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1212.2 868 67.9
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1211.8 862 67.9
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1211.4 863 67.7
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1210.7 857 68.0
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1210.3 885 67.0
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1209.9 877 66.7
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1208.7 871 67.0
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1208.4 866 66.9
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1208.0 864 68.8
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1207.6 863 67.7
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1207.6 865 66.5
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1206.4 861 67.6
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1203.0 866 67.1
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1203.0 863 66.9
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1201.8 865 66.5
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1199.5 862 67.7
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1199.1 865 67.9
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1196.0 862 67.4
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1194.9 862 67.3
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1194.9 865 66.7
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1194.5 862 67.3
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1192.9 865 67.7
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1192.9 862 67.4
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1192.6 863 67.0
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1192.2 866 67.2
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1191.8 866 67.0
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1190.6 864 67.8
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1189.5 863 67.2
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1188.3 874 65.7
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1186.4 870 66.2
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1185.6 863 67.1
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1183.7 866 66.6
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1174.1 862 66.6
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1171.4 860 66.5
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1170.6 859 66.6
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1161.4 871 64.6
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1161.0 862 66.6
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1142.9 829 67.6
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1105.5 865 63.2
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1091.6 851 63.1
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 7.1e-311 1070.5 865 60.2
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 9.6e-305 1050.0 743 69.4
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 5.3e-303 1044.3 859 60.8
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 4.5e-302 1041.2 691 72.1
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 5.5e-292 1007.7 647 74.7
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 8.2e-288 993.8 860 55.7
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 9.1e-287 990.3 691 69.9
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 3.4e-286 988.4 862 60.0
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 4.5e-286 988.0 862 56.8
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 4.7e-283 978.0 867 55.8
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 1.5e-268 929.9 871 52.6
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.1e-207 727.6 776 48.5
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.2e-159 566.6 421 67.0
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 1.2e-153 548.1 474 57.8
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 7.7e-145 518.8 462 56.7
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.3e-120 438.3 359 61.3
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 3.3e-87 327.4 309 56.6
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 2.1e-65 255.0 204 63.2
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.6e-62 245.4 168 69.6
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 2.0e-52 211.8 172 62.2
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.8e-45 188.7 174 54.0
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 9.7e-39 166.4 194 47.4
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 3.1e-37 161.4 216 42.6
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 2.7e-33 148.3 150 49.3
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.7e-28 131.7 85 74.1
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.6e-25 122.5 120 53.3
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 6.8e-24 117.1 87 67.8
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 3.4e-23 114.8 69 78.3
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 2.0e-20 105.5 90 56.7
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 5.9e-20 104.0 81 59.3
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 2.1e-17 95.5 106 50.0
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.8e-13 82.4 316 25.6
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.2e-12 79.7 274 26.3
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.7e-11 75.9 330 24.8
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 8.6e-11 73.6 66 59.1
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.5e-10 72.8 328 25.3
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.4e-08 66.2 328 24.4
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 3.1e-08 65.1 348 23.0
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 5.2e-08 64.3 240 24.6
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.7e-06 59.3 30 80.0
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.7e-06 59.3 209 29.2
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.7e-06 58.2 239 21.3
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 3.7e-06 58.2 94 38.3


User provided reference genes

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