Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08779 Selenicereus undatus HOM05D004023 ORTHO05D004681 1.6e-180 636.0 315 100.0
AUR62028938 Chenopodium quinoa HOM05D004023 ORTHO05D004681 4.9e-73 278.9 245 64.1
AUR62025247 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.1e-72 277.7 262 61.5
BraA07t28423Z Brassica rapa HOM05D004023 ORTHO05D004681 1.5e-66 257.3 202 63.9
A07p06280 Brassica napus HOM05D004023 ORTHO05D004681 2.0e-66 256.9 202 63.9
BcaB06g26883 Brassica carinata HOM05D004023 ORTHO05D004681 4.5e-66 255.8 201 64.2
BcaC06g35952 Brassica carinata HOM05D004023 ORTHO05D004681 5.8e-66 255.4 201 63.7
C07p09330 Brassica napus HOM05D004023 ORTHO05D004681 9.9e-66 254.6 195 64.1
BolC7t41351H Brassica oleracea HOM05D004023 ORTHO05D004681 9.9e-66 254.6 195 64.1
Actinidia29930 Actinidia chinensis HOM05D004023 ORTHO05D004681 2.2e-65 253.4 245 55.9
AL3G43670 Arabidopsis lyrata HOM05D004023 ORTHO05D004681 6.4e-65 251.9 223 58.3
MD02G1091000 Malus domestica HOM05D004023 ORTHO05D004681 6.4e-65 251.9 198 64.6
Haze_26009 Corylus avellana HOM05D004023 ORTHO05D004681 1.9e-64 250.4 248 55.6
TPR.G28584 Trifolium pratense HOM05D004023 ORTHO05D004681 2.4e-64 250.0 214 60.7
AT2G06025 Arabidopsis thaliana HOM05D004023 ORTHO05D004681 5.4e-64 248.8 206 61.2
Cfa002993 Carpinus fangiana HOM05D004023 ORTHO05D004681 1.2e-63 247.7 248 54.8
Ciclev10009135m.g Citrus clementina HOM05D004023 ORTHO05D004681 1.2e-63 247.7 225 57.8
Lj6g0013866 Lotus japonicus HOM05D004023 ORTHO05D004681 1.2e-63 247.7 216 59.7
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 1.2e-63 247.7 210 62.9
MD15G1217100 Malus domestica HOM05D004023 ORTHO05D004681 1.2e-63 247.7 206 61.2
PGR142G0045 Punica granatum HOM05D004023 ORTHO05D004681 1.2e-63 247.7 221 58.8
Atru.chr7.1700 Acer truncatum HOM05D004023 ORTHO05D004681 1.6e-63 247.3 211 59.2
CSS0019806 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 2.1e-63 246.9 216 61.6
Dinv42390 Davidia involucrata HOM05D004023 ORTHO05D004681 2.1e-63 246.9 234 58.1
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 2.7e-63 246.5 200 62.5
Psat1g134240 Pisum sativum HOM05D004023 ORTHO05D004681 3.5e-63 246.1 187 65.8
THA.LOC104826588 Tarenaya hassleriana HOM05D004023 ORTHO05D004681 4.6e-63 245.7 209 60.8
CSS0007502 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 6.0e-63 245.4 205 62.9
Glyma.09G069500 Glycine max HOM05D004023 ORTHO05D004681 6.0e-63 245.4 200 62.0
QL11p000695 Quercus lobata HOM05D004023 ORTHO05D004681 7.9e-63 245.0 215 59.1
Eucgr.C00816 Eucalyptus grandis HOM05D004023 ORTHO05D004681 1.3e-62 244.2 213 57.3
Glyma.15G177500 Glycine max HOM05D004023 ORTHO05D004681 1.3e-62 244.2 182 66.5
Aa31sc133G50 Aethionema arabicum HOM05D004023 ORTHO05D004681 1.8e-62 243.8 212 59.9
arahy.Tifrunner.gnm1.ann1.XHC94G Arachis hypogaea HOM05D004023 ORTHO05D004681 1.8e-62 243.8 176 69.9
Carub.0003s2716 Capsella rubella HOM05D004023 ORTHO05D004681 1.8e-62 243.8 201 61.2
CARHR103710 Cardamine hirsuta HOM05D004023 ORTHO05D004681 1.8e-62 243.8 208 58.2
Medtr2g041620 Medicago truncatula HOM05D004023 ORTHO05D004681 1.8e-62 243.8 213 60.1
Thhalv10002632m.g Eutrema salsugineum HOM05D004023 ORTHO05D004681 3.9e-62 242.7 219 57.5
CiPaw.03G206900 Carya illinoinensis HOM05D004023 ORTHO05D004681 5.1e-62 242.3 263 51.7
Nitab4.5_0005767g0010 Nicotiana tabacum HOM05D004023 ORTHO05D004681 5.1e-62 242.3 191 65.4
Thecc.09G077600 Theobroma cacao HOM05D004023 ORTHO05D004681 6.7e-62 241.9 209 59.8
CSS0006992 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.9e-61 240.4 205 62.0
Phvul.009G227400 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 1.9e-61 240.4 210 61.0
Sp3g24610 Schrenkiella parvula HOM05D004023 ORTHO05D004681 1.9e-61 240.4 199 59.3
Peaxi162Scf00554g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 5.6e-61 238.8 213 61.0
Prupe.7G199400 Prunus persica HOM05D004023 ORTHO05D004681 5.6e-61 238.8 226 56.2
arahy.Tifrunner.gnm1.ann1.KDYD97 Arachis hypogaea HOM05D004023 ORTHO05D004681 9.6e-61 238.0 226 57.1
VMungo1309G2832 Vigna mungo HOM05D004023 ORTHO05D004681 1.3e-60 237.7 200 62.0
Cc06_g12120 Coffea canephora HOM05D004023 ORTHO05D004681 8.1e-60 235.0 174 69.0
Gohir.A06G076200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.4e-59 234.2 211 59.7
Gorai.010G088100 Gossypium raimondii HOM05D004023 ORTHO05D004681 1.4e-59 234.2 211 59.7
TAR383G0448 Trochodendron aralioides HOM05D004023 ORTHO05D004681 6.9e-59 231.9 244 53.7
PGSC0003DMG400027761 Solanum tuberosum HOM05D004023 ORTHO05D004681 1.2e-58 231.1 220 55.9
CDE05G3056 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 5.8e-58 228.8 243 49.4
Ca_23416_v3 Cicer arietinum L. HOM05D004023 ORTHO05D004681 5.8e-58 228.8 199 59.3
Potri.006G142100 Populus trichocarpa HOM05D004023 ORTHO05D004681 5.8e-58 228.8 243 51.9
Nitab4.5_0000024g0190 Nicotiana tabacum HOM05D004023 ORTHO05D004681 7.6e-58 228.4 176 64.8
Sabra06G0111200 Salix brachista HOM05D004023 ORTHO05D004681 9.9e-58 228.0 240 52.5
arahy.Tifrunner.gnm1.ann1.KW18SN Arachis hypogaea HOM05D004023 ORTHO05D004681 1.4e-56 224.2 211 54.5
CSS0012197 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 7.1e-56 221.9 247 53.4
EL10Ac8g19063 Beta vulgaris HOM05D004023 ORTHO05D004681 1.2e-55 221.1 194 60.8
CANSAT56G0673 Cannabis sativa HOM05D004023 ORTHO05D004681 1.6e-55 220.7 232 53.9
Aqoxy7G01044 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 6.0e-55 218.8 233 51.9
DCAR_031922 Daucus carota HOM05D004023 ORTHO05D004681 1.3e-54 217.6 248 50.8
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.8e-54 217.2 213 53.1
TWI34G0375 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 2.3e-54 216.9 208 55.8
CsaV3_1G041000 Cucumis sativus L. HOM05D004023 ORTHO05D004681 1.1e-53 214.5 212 52.4
CSS0047726 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 9.6e-53 211.5 232 53.9
HPP92_013291 Vanilla planifolia HOM05D004023 ORTHO05D004681 2.8e-52 209.9 184 57.1
HanXRQChr09g0237831 Helianthus annuus HOM05D004023 ORTHO05D004681 3.7e-52 209.5 199 55.3
TWI63G1612 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 3.7e-52 209.5 199 56.8
DCAR_024747 Daucus carota HOM05D004023 ORTHO05D004681 4.8e-52 209.1 248 50.4
Gohir.D06G075200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 8.2e-52 208.4 188 59.0
ECA240G3187 Erigeron canadensis HOM05D004023 ORTHO05D004681 1.8e-51 207.2 205 54.6
Glyma.13G110200 Glycine max HOM05D004023 ORTHO05D004681 1.5e-50 204.1 176 61.4
Solyc05g025890.3 Solanum lycopersicum HOM05D004023 ORTHO05D004681 2.0e-50 203.8 210 54.3
Sopen05g021320 Solanum pennellii HOM05D004023 ORTHO05D004681 3.4e-50 203.0 210 54.8
TAR369G0443 Trochodendron aralioides HOM05D004023 ORTHO05D004681 7.6e-50 201.8 180 55.0
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 1.0e-49 201.4 250 48.4
Sed0007208 Sechium edule HOM05D004023 ORTHO05D004681 2.2e-49 200.3 211 48.8
MBI13_g42818_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 3.8e-49 199.5 184 53.8
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 4.2e-48 196.1 201 52.2
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 5.5e-48 195.7 193 53.4
FAN26G1792 Fragaria x ananassa HOM05D004023 ORTHO05D004681 5.5e-48 195.7 208 51.0
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 5.5e-48 195.7 193 53.9
FvH4_1g08620 Fragaria vesca HOM05D004023 ORTHO05D004681 2.1e-47 193.7 208 51.0
FAN19G1115 Fragaria x ananassa HOM05D004023 ORTHO05D004681 2.1e-47 193.7 208 51.0
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 4.6e-47 192.6 213 48.8
FAN28G2268 Fragaria x ananassa HOM05D004023 ORTHO05D004681 6.0e-47 192.2 208 50.5
FAN26G3281 Fragaria x ananassa HOM05D004023 ORTHO05D004681 7.9e-47 191.8 208 50.5
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 1.0e-46 191.4 176 53.4
Nitab4.5_0001925g0260 Nicotiana tabacum HOM05D004023 ORTHO05D004681 1.0e-46 191.4 205 52.7
RcHm_v2.0_Chr2g0094881 Rosa chinensis HOM05D004023 ORTHO05D004681 1.0e-46 191.4 208 50.0
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 1.3e-46 191.0 193 50.8
FAN23G1893 Fragaria x ananassa HOM05D004023 ORTHO05D004681 2.3e-46 190.3 208 50.0
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 3.0e-46 189.9 225 47.6
Sc18g0002510 Simmondsia chinensis HOM05D004023 ORTHO05D004681 5.1e-46 189.1 175 57.7
MSTRG.18474 Avicennia marina HOM05D004023 ORTHO05D004681 8.7e-46 188.3 188 50.5
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 8.7e-46 188.3 208 48.6
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 1.1e-45 188.0 194 52.6
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 1.1e-45 188.0 199 50.8
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 1.1e-45 188.0 172 55.8
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.1e-45 188.0 193 51.8
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 1.9e-45 187.2 203 51.2
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 2.5e-45 186.8 209 48.8
PGR119G0815 Punica granatum HOM05D004023 ORTHO05D004681 2.5e-45 186.8 199 50.3
PGSC0003DMG400004653 Solanum tuberosum HOM05D004023 ORTHO05D004681 3.3e-45 186.4 203 49.8
DCAR_006328 Daucus carota HOM05D004023 ORTHO05D004681 4.3e-45 186.0 181 53.0
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 4.3e-45 186.0 204 52.5
Solyc12g099940.2 Solanum lycopersicum HOM05D004023 ORTHO05D004681 5.7e-45 185.7 205 50.2
Sopen12g034560 Solanum pennellii HOM05D004023 ORTHO05D004681 7.4e-45 185.3 203 50.2
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 9.7e-45 184.9 173 54.9
CAN.G484.8 Capsicum annuum HOM05D004023 ORTHO05D004681 1.3e-44 184.5 205 50.2
Migut.L01563 Erythranthe guttata HOM05D004023 ORTHO05D004681 2.8e-44 183.3 210 49.5
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 5.3e-43 179.1 199 47.7
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 9.0e-43 178.3 175 51.4
Lj4A912T25 Lonicera japonica HOM05D004023 ORTHO05D004681 1.2e-42 177.9 209 48.8
Manes.03G040200 Manihot esculenta HOM05D004023 ORTHO05D004681 3.4e-42 176.4 269 42.0
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 7.6e-42 175.3 176 50.6
Phvul.003G131100 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 1.0e-41 174.9 250 42.4
ClCG03G015110 Citrullus lanatus HOM05D004023 ORTHO05D004681 1.3e-41 174.5 215 46.0
CDE05G0867 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 1.7e-41 174.1 137 62.0
Nitab4.5_0011805g0030 Nicotiana tabacum HOM05D004023 ORTHO05D004681 1.7e-41 174.1 223 44.4
Gohir.D13G196385 Gossypium hirsutum HOM05D004023 ORTHO05D004681 5.0e-41 172.6 177 48.6
Gorai.013G224500 Gossypium raimondii HOM05D004023 ORTHO05D004681 5.0e-41 172.6 177 48.6
MELO3C015518.2 Cucumis melo HOM05D004023 ORTHO05D004681 4.2e-40 169.5 158 51.9
Gohir.A13G191000 Gossypium hirsutum HOM05D004023 ORTHO05D004681 4.2e-40 169.5 177 47.5
Os03g0177000 Oryza sativa ssp. japonica HOM05D004023 ORTHO05D004681 2.1e-39 167.2 195 47.7
Zm00001eb401920 Zea mays HOM05D004023 ORTHO05D004681 5.1e-38 162.5 174 48.3
Zm00001eb401960 Zea mays HOM05D004023 ORTHO05D004681 5.1e-38 162.5 174 48.3
Glyma.17G049500 Glycine max HOM05D004023 ORTHO05D004681 1.1e-37 161.4 176 51.1
Lsat_1_v5_gn_2_38101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.5e-37 161.0 209 44.5
EL10Ac6g15385 Beta vulgaris HOM05D004023 ORTHO05D004681 7.4e-37 158.7 246 39.4
vmacro06339 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 7.4e-37 158.7 248 42.3
SalBow6G6388 Salvia bowleyana HOM05D004023 ORTHO05D004681 9.7e-37 158.3 148 54.1
Lj2C939G1 Lonicera japonica HOM05D004023 ORTHO05D004681 2.8e-36 156.8 139 56.8
unitig_0.g313 Utricularia gibba HOM05D004023 ORTHO05D004681 6.3e-36 155.6 128 58.6
Nn7g37124 Nelumbo nucifera HOM05D004023 ORTHO05D004681 8.2e-36 155.2 148 52.0
Duzib168G1033 Durio zibethinus HOM05D004023 ORTHO05D004681 2.4e-35 153.7 235 42.1
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 9.1e-35 151.8 252 40.5
unitig_60.g25636 Utricularia gibba HOM05D004023 ORTHO05D004681 1.5e-34 151.0 204 44.6
SalBow5G0641 Salvia bowleyana HOM05D004023 ORTHO05D004681 3.4e-34 149.8 181 44.2
Rhsim03G0227800 Rhododendron simsii HOM05D004023 ORTHO05D004681 1.0e-33 148.3 207 44.4
Actinidia07003 Actinidia chinensis HOM05D004023 ORTHO05D004681 3.2e-32 143.3 165 47.3
PSO063G3828 Papaver somniferum HOM05D004023 ORTHO05D004681 4.2e-32 142.9 187 41.7
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 7.2e-32 142.1 185 42.7
Cpa.g.sc28.45 Carica papaya HOM05D004023 ORTHO05D004681 9.4e-32 141.7 277 39.0
Nn8g38657 Nelumbo nucifera HOM05D004023 ORTHO05D004681 1.2e-31 141.4 120 62.5
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 1.6e-31 141.0 263 37.3
Zm00001eb408770 Zea mays HOM05D004023 ORTHO05D004681 1.4e-24 117.9 119 47.1
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 4.2e-24 116.3 177 40.7
Lj2C946G11 Lonicera japonica HOM05D004023 ORTHO05D004681 7.2e-24 115.5 252 32.9
PSO339G4574 Papaver somniferum HOM05D004023 ORTHO05D004681 1.6e-23 114.4 173 37.0
SMO200G0269 Selaginella moellendorffii HOM05D004023 ORTHO05D004681 6.1e-23 112.5 152 37.5
CSS0000978 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 6.7e-22 109.0 217 36.4
Sed0008804 Sechium edule HOM05D004023 ORTHO05D004681 5.7e-21 105.9 201 34.8
Oeu020552.2 Olea europaea HOM05D004023 ORTHO05D004681 7.4e-21 105.5 105 56.2
PSO384G0928 Papaver somniferum HOM05D004023 ORTHO05D004681 7.4e-21 105.5 155 39.4
PSO384G3720 Papaver somniferum HOM05D004023 ORTHO05D004681 7.4e-21 105.5 155 39.4
PSO339G2030 Papaver somniferum HOM05D004023 ORTHO05D004681 4.1e-19 99.8 171 35.1
PSO339G0741 Papaver somniferum HOM05D004023 ORTHO05D004681 2.6e-18 97.1 190 34.7
Pp3c12_9920 Physcomitrium patens HOM05D004023 ORTHO05D004681 3.8e-17 93.2 160 37.5
Oeu013106.1 Olea europaea HOM05D004023 ORTHO05D004681 1.4e-11 74.7 87 49.4
PSO478G2869 Papaver somniferum HOM05D004023 ORTHO05D004681 2.0e-10 70.9 95 37.9
Lalb_Chr12g0200111 Lupinus albus HOM05D004023 ORTHO05D004681 7.7e-10 68.9 55 65.5
Lalb_Chr12g0200121 Lupinus albus HOM05D004023 ORTHO05D004681 5.5e-08 62.8 94 39.4
arahy.Tifrunner.gnm1.ann1.NU1P8G Arachis hypogaea HOM05D004023 ORTHO05D004681 4.7e-07 59.7 204 29.4
Glyma.08G144367 Glycine max HOM05D004023 ORTHO05D004681 6.8e-06 55.8 61 49.2


User provided reference genes

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