Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08704 Selenicereus undatus HOM05D003230 ORTHO05D003680 6.4e-33 143.7 82 100.0
Hund25962 Selenicereus undatus HOM05D003230 ORTHO05D003680 5.6e-21 104.0 77 74.0
Sc01g0010940 Simmondsia chinensis HOM05D003230 ORTHO05D003680 5.8e-18 94.0 72 70.8
AUR62017004 Chenopodium quinoa HOM05D003230 ORTHO05D003680 1.7e-17 92.4 79 69.6
AUR62014810 Chenopodium quinoa HOM05D003230 ORTHO05D003680 3.8e-17 91.3 79 69.6
AUR62002554 Chenopodium quinoa HOM05D003230 ORTHO05D003680 2.1e-15 85.5 79 63.3
Cpa.g.sc37.119 Carica papaya HOM05D003230 ORTHO05D003680 3.5e-15 84.7 74 63.5
THA.LOC104806468 Tarenaya hassleriana HOM05D003230 ORTHO05D003680 3.5e-15 84.7 69 66.7
Ah.09g237290 Amaranthus hybridus HOM05D003230 ORTHO05D003680 4.6e-15 84.3 73 63.0
EL10Ac8g20374 Beta vulgaris HOM05D003230 ORTHO05D003680 6.0e-15 84.0 79 62.0
AUR62029972 Chenopodium quinoa HOM05D003230 ORTHO05D003680 3.9e-14 81.3 79 60.8
TWI60G0278 Tripterygium wilfordii HOM05D003230 ORTHO05D003680 3.9e-14 81.3 79 55.7
Thecc.03G213500 Theobroma cacao HOM05D003230 ORTHO05D003680 6.7e-14 80.5 74 60.8
Cfa011873 Carpinus fangiana HOM05D003230 ORTHO05D003680 1.1e-13 79.7 74 59.5
TWI81G0087 Tripterygium wilfordii HOM05D003230 ORTHO05D003680 2.5e-13 78.6 79 53.2
Duzib205G1067 Durio zibethinus HOM05D003230 ORTHO05D003680 4.3e-13 77.8 74 58.1
THA.LOC104813070 Tarenaya hassleriana HOM05D003230 ORTHO05D003680 4.3e-13 77.8 68 63.2
CiPaw.11G106000 Carya illinoinensis HOM05D003230 ORTHO05D003680 2.1e-12 75.5 82 56.1
Haze_09234 Corylus avellana HOM05D003230 ORTHO05D003680 2.1e-12 75.5 69 60.9
PGR042G1295 Punica granatum HOM05D003230 ORTHO05D003680 3.7e-12 74.7 75 57.3
COL.COLO4_20922 Corchorus olitorius HOM05D003230 ORTHO05D003680 4.8e-12 74.3 68 58.8
TAR375G0039 Trochodendron aralioides HOM05D003230 ORTHO05D003680 4.8e-12 74.3 74 58.1
ClCG01G001210 Citrullus lanatus HOM05D003230 ORTHO05D003680 6.2e-12 73.9 77 53.2
MELO3C005814.2 Cucumis melo HOM05D003230 ORTHO05D003680 6.2e-12 73.9 77 55.8
Aqoxy5G04400 Aquilegia oxysepala HOM05D003230 ORTHO05D003680 8.2e-12 73.6 70 58.6
Gorai.002G179600 Gossypium raimondii HOM05D003230 ORTHO05D003680 8.2e-12 73.6 72 54.2
Gohir.A11G017300 Gossypium hirsutum HOM05D003230 ORTHO05D003680 1.1e-11 73.2 69 55.1
Gorai.007G018000 Gossypium raimondii HOM05D003230 ORTHO05D003680 1.4e-11 72.8 72 54.2
Dinv29184 Davidia involucrata HOM05D003230 ORTHO05D003680 1.8e-11 72.4 74 56.8
Gohir.A11G017400 Gossypium hirsutum HOM05D003230 ORTHO05D003680 1.8e-11 72.4 69 55.1
Gohir.D11G017100 Gossypium hirsutum HOM05D003230 ORTHO05D003680 1.8e-11 72.4 69 55.1
Rhsim03G0218900 Rhododendron simsii HOM05D003230 ORTHO05D003680 1.8e-11 72.4 74 51.4
THA.LOC104815499 Tarenaya hassleriana HOM05D003230 ORTHO05D003680 1.8e-11 72.4 72 59.7
vmacro06480 Vaccinium macrocarpon HOM05D003230 ORTHO05D003680 1.8e-11 72.4 74 54.1
MD14G1143500 Malus domestica HOM05D003230 ORTHO05D003680 2.4e-11 72.0 72 52.8
PGR031G1665 Punica granatum HOM05D003230 ORTHO05D003680 3.1e-11 71.6 74 50.0
Sed0010900 Sechium edule HOM05D003230 ORTHO05D003680 3.1e-11 71.6 72 52.8
GSVIVG01019720001 Vitis vinifera HOM05D003230 ORTHO05D003680 3.1e-11 71.6 74 58.1
Gohir.D12G244701 Gossypium hirsutum HOM05D003230 ORTHO05D003680 4.0e-11 71.2 74 54.1
EL10Ac3g06251 Beta vulgaris HOM05D003230 ORTHO05D003680 5.3e-11 70.9 79 54.4
Gorai.007G018100 Gossypium raimondii HOM05D003230 ORTHO05D003680 5.3e-11 70.9 72 52.8
Dinv11462 Davidia involucrata HOM05D003230 ORTHO05D003680 6.9e-11 70.5 74 52.7
Thhalv10028773m.g Eutrema salsugineum HOM05D003230 ORTHO05D003680 6.9e-11 70.5 69 58.0
Gohir.D11G017200 Gossypium hirsutum HOM05D003230 ORTHO05D003680 6.9e-11 70.5 78 50.0
Prupe.5G137500 Prunus persica HOM05D003230 ORTHO05D003680 6.9e-11 70.5 72 55.6
Gohir.A02G094400 Gossypium hirsutum HOM05D003230 ORTHO05D003680 9.0e-11 70.1 74 52.7
Gohir.D03G089100 Gossypium hirsutum HOM05D003230 ORTHO05D003680 9.0e-11 70.1 74 52.7
Gorai.003G072400 Gossypium raimondii HOM05D003230 ORTHO05D003680 9.0e-11 70.1 74 52.7
Lsat_1_v5_gn_7_23521 Lactuca sativa HOM05D003230 ORTHO05D003680 9.0e-11 70.1 72 58.3
Sed0000082 Sechium edule HOM05D003230 ORTHO05D003680 9.0e-11 70.1 72 48.6
Duzib084G0151 Durio zibethinus HOM05D003230 ORTHO05D003680 1.2e-10 69.7 74 59.5
Gorai.008G262300 Gossypium raimondii HOM05D003230 ORTHO05D003680 1.2e-10 69.7 74 54.1
Gorai.012G125600 Gossypium raimondii HOM05D003230 ORTHO05D003680 1.2e-10 69.7 69 53.6
QL12p002913 Quercus lobata HOM05D003230 ORTHO05D003680 1.2e-10 69.7 73 58.9
Lsat_1_v5_gn_4_50621 Lactuca sativa HOM05D003230 ORTHO05D003680 1.5e-10 69.3 73 54.8
MD06G1127700 Malus domestica HOM05D003230 ORTHO05D003680 1.5e-10 69.3 71 52.1
Sp6g07030 Schrenkiella parvula HOM05D003230 ORTHO05D003680 2.0e-10 68.9 69 55.1
Dinv10539 Davidia involucrata HOM05D003230 ORTHO05D003680 2.6e-10 68.6 72 55.6
Gorai.008G059100 Gossypium raimondii HOM05D003230 ORTHO05D003680 2.6e-10 68.6 69 52.2
QL02p026579 Quercus lobata HOM05D003230 ORTHO05D003680 2.6e-10 68.6 72 55.6
CSS0049301 Camellia sinensis var. sinensis HOM05D003230 ORTHO05D003680 3.4e-10 68.2 74 51.4
CiPaw.12G073700 Carya illinoinensis HOM05D003230 ORTHO05D003680 3.4e-10 68.2 82 51.2
Ca_11396_v3 Cicer arietinum L. HOM05D003230 ORTHO05D003680 4.5e-10 67.8 74 51.4
CsaV3_5G001330 Cucumis sativus L. HOM05D003230 ORTHO05D003680 5.8e-10 67.4 77 51.9
MBI12_g01758_MAGBIO Magnolia biondii HOM05D003230 ORTHO05D003680 5.8e-10 67.4 79 57.0
Nn7g38179 Nelumbo nucifera HOM05D003230 ORTHO05D003680 5.8e-10 67.4 74 52.7
BcaB05g23900 Brassica carinata HOM05D003230 ORTHO05D003680 7.6e-10 67.0 69 52.2
Ciclev10020756m.g Citrus clementina HOM05D003230 ORTHO05D003680 7.6e-10 67.0 82 53.7
Duzib068G0649 Durio zibethinus HOM05D003230 ORTHO05D003680 7.6e-10 67.0 74 54.1
CANSAT21G1439 Cannabis sativa HOM05D003230 ORTHO05D003680 1.0e-09 66.6 71 53.5
Gohir.A12G243700 Gossypium hirsutum HOM05D003230 ORTHO05D003680 1.0e-09 66.6 74 50.0
Atru.chr9.2608 Acer truncatum HOM05D003230 ORTHO05D003680 1.3e-09 66.2 73 56.2
Eucgr.D02540 Eucalyptus grandis HOM05D003230 ORTHO05D003680 1.3e-09 66.2 78 51.3
TPR.G10396 Trifolium pratense HOM05D003230 ORTHO05D003680 1.3e-09 66.2 79 48.1
HanXRQChr04g0116771 Helianthus annuus HOM05D003230 ORTHO05D003680 1.7e-09 65.9 71 53.5
Hma1.2p1_0115F.1_g055850 Hydrangea macrophylla HOM05D003230 ORTHO05D003680 1.7e-09 65.9 71 53.5
Actinidia34293 Actinidia chinensis HOM05D003230 ORTHO05D003680 2.2e-09 65.5 74 50.0
Carub.0006s2906 Capsella rubella HOM05D003230 ORTHO05D003680 2.2e-09 65.5 69 52.2
Dinv17274 Davidia involucrata HOM05D003230 ORTHO05D003680 2.2e-09 65.5 74 52.7
FAN13G1021 Fragaria x ananassa HOM05D003230 ORTHO05D003680 2.2e-09 65.5 84 50.0
Lj2A147G46 Lonicera japonica HOM05D003230 ORTHO05D003680 2.2e-09 65.5 73 50.7
Lj5g0004131 Lotus japonicus HOM05D003230 ORTHO05D003680 2.2e-09 65.5 69 50.7
Sp1g28680 Schrenkiella parvula HOM05D003230 ORTHO05D003680 2.2e-09 65.5 69 53.6
TAR374G1299 Trochodendron aralioides HOM05D003230 ORTHO05D003680 2.2e-09 65.5 74 48.6
ECA236G1073 Erigeron canadensis HOM05D003230 ORTHO05D003680 2.9e-09 65.1 71 52.1
Actinidia28274 Actinidia chinensis HOM05D003230 ORTHO05D003680 3.8e-09 64.7 74 51.4
FAN08G0072 Fragaria x ananassa HOM05D003230 ORTHO05D003680 3.8e-09 64.7 84 50.0
FAN18G2848 Fragaria x ananassa HOM05D003230 ORTHO05D003680 3.8e-09 64.7 86 48.8
HanXRQChr11g0327201 Helianthus annuus HOM05D003230 ORTHO05D003680 6.5e-09 63.9 67 55.2
vmacro10177 Vaccinium macrocarpon HOM05D003230 ORTHO05D003680 6.5e-09 63.9 74 52.7
AL6G44380 Arabidopsis lyrata HOM05D003230 ORTHO05D003680 8.4e-09 63.5 69 49.3
AT1G33230 Arabidopsis thaliana HOM05D003230 ORTHO05D003680 8.4e-09 63.5 69 52.2
CARHR032530 Cardamine hirsuta HOM05D003230 ORTHO05D003680 8.4e-09 63.5 69 50.7
Cc02_g00530 Coffea canephora HOM05D003230 ORTHO05D003680 8.4e-09 63.5 74 51.4
arahy.Tifrunner.gnm1.ann1.4JD467 Arachis hypogaea HOM05D003230 ORTHO05D003680 1.1e-08 63.2 79 45.6
arahy.Tifrunner.gnm1.ann1.X6Z9M4 Arachis hypogaea HOM05D003230 ORTHO05D003680 1.1e-08 63.2 79 45.6
Carub.0001s3142 Capsella rubella HOM05D003230 ORTHO05D003680 1.1e-08 63.2 69 52.2
CDE04G3491 Ceratophyllum demersum HOM05D003230 ORTHO05D003680 1.1e-08 63.2 73 50.7
FvH4_5g10150 Fragaria vesca HOM05D003230 ORTHO05D003680 1.1e-08 63.2 84 48.8
HanXRQChr17g0556021 Helianthus annuus HOM05D003230 ORTHO05D003680 1.1e-08 63.2 67 53.7
Actinidia08726 Actinidia chinensis HOM05D003230 ORTHO05D003680 1.4e-08 62.8 74 48.6
Actinidia18693 Actinidia chinensis HOM05D003230 ORTHO05D003680 1.4e-08 62.8 74 50.0
PSO063G4824 Papaver somniferum HOM05D003230 ORTHO05D003680 1.4e-08 62.8 72 54.2
AL1G47600 Arabidopsis lyrata HOM05D003230 ORTHO05D003680 1.9e-08 62.4 69 50.7
AT4G10430 Arabidopsis thaliana HOM05D003230 ORTHO05D003680 1.9e-08 62.4 69 49.3
BcaB04g17923 Brassica carinata HOM05D003230 ORTHO05D003680 1.9e-08 62.4 69 50.7
DCAR_020396 Daucus carota HOM05D003230 ORTHO05D003680 1.9e-08 62.4 74 51.4
Psat6g240960 Pisum sativum HOM05D003230 ORTHO05D003680 1.9e-08 62.4 74 48.6
Solyc03g096810.3 Solanum lycopersicum HOM05D003230 ORTHO05D003680 1.9e-08 62.4 71 50.7
Sopen03g027550 Solanum pennellii HOM05D003230 ORTHO05D003680 1.9e-08 62.4 71 50.7
BcaC03g16395 Brassica carinata HOM05D003230 ORTHO05D003680 2.5e-08 62.0 69 49.3
Lj3C891G10 Lonicera japonica HOM05D003230 ORTHO05D003680 2.5e-08 62.0 71 50.7
CARHR256220 Cardamine hirsuta HOM05D003230 ORTHO05D003680 3.2e-08 61.6 69 49.3
Thhalv10008088m.g Eutrema salsugineum HOM05D003230 ORTHO05D003680 3.2e-08 61.6 69 47.8
PSO384G4355 Papaver somniferum HOM05D003230 ORTHO05D003680 3.2e-08 61.6 72 52.8
Sabra16G0307300 Salix brachista HOM05D003230 ORTHO05D003680 3.2e-08 61.6 72 48.6
FAN04G1600 Fragaria x ananassa HOM05D003230 ORTHO05D003680 4.2e-08 61.2 84 48.8
A02p26560 Brassica napus HOM05D003230 ORTHO05D003680 5.5e-08 60.8 67 52.2
BraA02t07659Z Brassica rapa HOM05D003230 ORTHO05D003680 5.5e-08 60.8 67 52.2
Lsat_1_v5_gn_0_9600 Lactuca sativa HOM05D003230 ORTHO05D003680 5.5e-08 60.8 66 54.5
Peaxi162Scf01650g00041 Petunia axillaris HOM05D003230 ORTHO05D003680 5.5e-08 60.8 68 51.5
Phvul.007G004400 Phaseolus vulgaris HOM05D003230 ORTHO05D003680 5.5e-08 60.8 71 47.9
Potri.001G454400 Populus trichocarpa HOM05D003230 ORTHO05D003680 5.5e-08 60.8 72 50.0
BcaC08g43889 Brassica carinata HOM05D003230 ORTHO05D003680 7.1e-08 60.5 69 47.8
PGSC0003DMG400000544 Solanum tuberosum HOM05D003230 ORTHO05D003680 7.1e-08 60.5 71 49.3
BolC6t36431H Brassica oleracea HOM05D003230 ORTHO05D003680 9.3e-08 60.1 68 48.5
Medtr1g116510 Medicago truncatula HOM05D003230 ORTHO05D003680 9.3e-08 60.1 71 46.5
BcaC07g37565 Brassica carinata HOM05D003230 ORTHO05D003680 1.2e-07 59.7 69 50.7
MBI04_g04799_MAGBIO Magnolia biondii HOM05D003230 ORTHO05D003680 1.2e-07 59.7 74 47.3
Potri.011G147500 Populus trichocarpa HOM05D003230 ORTHO05D003680 1.2e-07 59.7 64 53.1
Rhsim09G0211400 Rhododendron simsii HOM05D003230 ORTHO05D003680 1.2e-07 59.7 75 50.7
C02p42280 Brassica napus HOM05D003230 ORTHO05D003680 1.6e-07 59.3 68 48.5
Glyma.20G245400 Glycine max HOM05D003230 ORTHO05D003680 1.6e-07 59.3 73 43.8
A08p08660 Brassica napus HOM05D003230 ORTHO05D003680 2.1e-07 58.9 68 50.0
A09p33080 Brassica napus HOM05D003230 ORTHO05D003680 2.1e-07 58.9 68 47.1
BraA08t32879Z Brassica rapa HOM05D003230 ORTHO05D003680 2.1e-07 58.9 68 50.0
BraA09t38852Z Brassica rapa HOM05D003230 ORTHO05D003680 2.1e-07 58.9 68 47.1
RcHm_v2.0_Chr7g0188151 Rosa chinensis HOM05D003230 ORTHO05D003680 2.1e-07 58.9 70 51.4
C06p12740 Brassica napus HOM05D003230 ORTHO05D003680 3.5e-07 58.2 68 48.5
BolC2t10266H Brassica oleracea HOM05D003230 ORTHO05D003680 3.5e-07 58.2 68 48.5
Nitab4.5_0000021g0290 Nicotiana tabacum HOM05D003230 ORTHO05D003680 3.5e-07 58.2 79 44.3
VMungo0720G2040 Vigna mungo HOM05D003230 ORTHO05D003680 3.5e-07 58.2 71 45.1
Nitab4.5_0002691g0010 Nicotiana tabacum HOM05D003230 ORTHO05D003680 6.1e-07 57.4 79 44.3
Peaxi162Scf00542g00014 Petunia axillaris HOM05D003230 ORTHO05D003680 7.9e-07 57.0 79 44.3
SGA_v2.0_scaffold59G20783 Striga asiatica HOM05D003230 ORTHO05D003680 1.3e-06 56.2 57 57.9
ECA234G3139 Erigeron canadensis HOM05D003230 ORTHO05D003680 1.8e-06 55.8 69 43.5
SGA_v2.0_scaffold165G38215 Striga asiatica HOM05D003230 ORTHO05D003680 2.3e-06 55.5 53 60.4
CDE02G3182 Ceratophyllum demersum HOM05D003230 ORTHO05D003680 3.0e-06 55.1 72 48.6
MSTRG.26946 Avicennia marina HOM05D003230 ORTHO05D003680 5.1e-06 54.3 50 60.0
HPP92_015201 Vanilla planifolia HOM05D003230 ORTHO05D003680 5.1e-06 54.3 77 40.3
SalBow2G3519 Salvia bowleyana HOM05D003230 ORTHO05D003680 6.7e-06 53.9 47 66.0
SEGI_40111 Sequoiadendron giganteum HOM05D003230 ORTHO05D003680 6.7e-06 53.9 78 43.6
HPP92_025402 Vanilla planifolia HOM05D003230 ORTHO05D003680 6.7e-06 53.9 77 42.9
DCAR_010553 Daucus carota HOM05D003230 ORTHO05D003680 8.7e-06 53.5 66 50.0


User provided reference genes

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