Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 4.5e-52 207.6 101 100.0
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 3.4e-20 101.7 55 81.8
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 2.2e-19 99.0 55 78.2
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 8.5e-19 97.1 66 68.2
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 1.1e-18 96.7 55 80.0
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 1.1e-18 96.7 53 81.1
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 1.1e-18 96.7 56 80.4
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.4e-18 96.3 53 83.0
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 1.4e-18 96.3 53 81.1
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 1.9e-18 95.9 53 77.4
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 1.9e-18 95.9 53 83.0
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 2.5e-18 95.5 54 79.6
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 3.2e-18 95.1 55 76.4
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 3.2e-18 95.1 53 75.5
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 3.2e-18 95.1 53 83.0
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 3.2e-18 95.1 53 79.2
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 3.2e-18 95.1 84 59.5
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 4.2e-18 94.7 53 75.5
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 4.2e-18 94.7 53 77.4
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 4.2e-18 94.7 53 77.4
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 5.5e-18 94.4 53 79.2
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 5.5e-18 94.4 83 61.4
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 5.5e-18 94.4 53 77.4
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 5.5e-18 94.4 53 81.1
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 5.5e-18 94.4 53 81.1
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 7.2e-18 94.0 53 81.1
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 7.2e-18 94.0 53 79.2
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 7.2e-18 94.0 53 81.1
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 9.4e-18 93.6 52 80.8
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 9.4e-18 93.6 53 81.1
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 9.4e-18 93.6 53 79.2
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 9.4e-18 93.6 81 58.0
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 9.4e-18 93.6 53 75.5
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 9.4e-18 93.6 53 79.2
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 1.2e-17 93.2 53 79.2
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 1.2e-17 93.2 53 77.4
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 1.6e-17 92.8 58 70.7
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 1.6e-17 92.8 55 76.4
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 2.1e-17 92.4 53 79.2
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 2.7e-17 92.0 56 78.6
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 2.7e-17 92.0 53 77.4
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 2.7e-17 92.0 52 80.8
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 2.7e-17 92.0 52 80.8
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 2.7e-17 92.0 53 75.5
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 2.7e-17 92.0 55 76.4
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 2.7e-17 92.0 55 76.4
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 3.6e-17 91.7 53 75.5
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 3.6e-17 91.7 53 77.4
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 3.6e-17 91.7 53 79.2
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 4.7e-17 91.3 53 75.5
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 4.7e-17 91.3 53 75.5
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 4.7e-17 91.3 53 77.4
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 6.1e-17 90.9 53 79.2
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 6.1e-17 90.9 85 54.1
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 7.9e-17 90.5 53 75.5
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 7.9e-17 90.5 53 75.5
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 7.9e-17 90.5 53 75.5
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 7.9e-17 90.5 53 77.4
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 1.0e-16 90.1 55 74.5
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 1.4e-16 89.7 53 71.7
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 1.4e-16 89.7 53 75.5
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 1.8e-16 89.4 53 75.5
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 1.8e-16 89.4 54 74.1
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 1.8e-16 89.4 54 74.1
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 1.8e-16 89.4 53 75.5
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 2.3e-16 89.0 53 71.7
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 3.0e-16 88.6 52 76.9
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 3.0e-16 88.6 53 73.6
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 3.9e-16 88.2 52 73.1
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 3.9e-16 88.2 52 73.1
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 3.9e-16 88.2 89 56.2
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 5.1e-16 87.8 53 73.6
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 5.1e-16 87.8 81 58.0
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 6.7e-16 87.4 72 58.3
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 6.7e-16 87.4 53 75.5
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 6.7e-16 87.4 53 73.6
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 8.8e-16 87.0 53 73.6
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 1.1e-15 86.7 53 71.7
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 1.5e-15 86.3 51 74.5
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 1.5e-15 86.3 51 74.5
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 2.0e-15 85.9 53 71.7
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 2.0e-15 85.9 53 75.5
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 7.4e-15 84.0 85 52.9
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 7.4e-15 84.0 56 67.9
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 1.3e-14 83.2 51 70.6
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 1.7e-14 82.8 50 66.0
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 1.7e-14 82.8 48 70.8
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 1.7e-14 82.8 48 70.8
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 2.2e-14 82.4 37 89.2
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 6.3e-14 80.9 36 91.7
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 8.2e-14 80.5 50 66.0
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 1.1e-13 80.1 53 71.7
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 1.8e-13 79.3 48 66.7
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 1.8e-13 79.3 48 66.7
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 1.8e-13 79.3 48 66.7
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 1.8e-13 79.3 48 66.7
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 1.8e-13 79.3 48 66.7
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 1.8e-13 79.3 48 66.7
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 1.8e-13 79.3 48 66.7
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 5.3e-13 77.8 48 64.6
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 5.3e-13 77.8 52 69.2
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 7.0e-13 77.4 50 64.0
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 7.0e-13 77.4 50 64.0
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 1.6e-12 76.3 48 64.6
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 2.6e-12 75.5 48 64.6
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 3.5e-12 75.1 36 83.3
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 4.5e-12 74.7 52 61.5
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 7.7e-12 73.9 51 62.7
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 7.7e-12 73.9 51 62.7
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 7.7e-12 73.9 51 62.7
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 1.7e-11 72.8 53 62.3
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 2.2e-11 72.4 38 78.9
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 2.2e-11 72.4 52 59.6
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 3.8e-11 71.6 52 63.5
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 8.5e-11 70.5 37 75.7
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 5.5e-10 67.8 72 43.1
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 5.5e-10 67.8 63 50.8
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.6e-09 66.2 48 54.2
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 3.6e-09 65.1 48 56.2
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 6.1e-09 64.3 35 74.3
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 1.4e-08 63.2 50 60.0
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 1.8e-08 62.8 38 68.4
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 3.0e-08 62.0 36 66.7
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 5.2e-08 61.2 30 76.7
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 3.3e-07 58.5 32 71.9
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 3.3e-07 58.5 33 75.8


User provided reference genes

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