Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08510 Selenicereus undatus HOM05D005388 ORTHO05D006281 3.9e-176 621.3 303 100.0
AUR62009518 Chenopodium quinoa HOM05D005388 ORTHO05D006281 3.4e-63 246.1 239 56.9
Sc04g0003930 Simmondsia chinensis HOM05D005388 ORTHO05D006281 4.9e-62 242.3 226 58.4
Dinv13961 Davidia involucrata HOM05D005388 ORTHO05D006281 2.4e-61 240.0 174 68.4
AUR62034770 Chenopodium quinoa HOM05D005388 ORTHO05D006281 1.6e-60 237.3 174 69.5
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 1.0e-59 234.6 319 45.8
COL.COLO4_31868 Corchorus olitorius HOM05D005388 ORTHO05D006281 1.7e-59 233.8 225 57.8
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 2.3e-59 233.4 256 50.8
QL03p029835 Quercus lobata HOM05D005388 ORTHO05D006281 3.9e-59 232.6 174 66.7
QL10p003604 Quercus lobata HOM05D005388 ORTHO05D006281 3.9e-59 232.6 174 66.7
GSVIVG01004448001 Vitis vinifera HOM05D005388 ORTHO05D006281 5.1e-59 232.3 176 65.9
VMungo1383G1280 Vigna mungo HOM05D005388 ORTHO05D006281 6.6e-59 231.9 175 65.7
EL10Ac5g11305 Beta vulgaris HOM05D005388 ORTHO05D006281 3.3e-58 229.6 239 54.8
Gohir.A06G152900 Gossypium hirsutum HOM05D005388 ORTHO05D006281 3.3e-58 229.6 174 64.4
Gohir.D06G159300 Gossypium hirsutum HOM05D005388 ORTHO05D006281 4.3e-58 229.2 174 64.4
Gorai.010G186000 Gossypium raimondii HOM05D005388 ORTHO05D006281 4.3e-58 229.2 174 64.4
Hma1.2p1_0660F.1_g197565 Hydrangea macrophylla HOM05D005388 ORTHO05D006281 4.3e-58 229.2 174 64.9
Eucgr.A00642 Eucalyptus grandis HOM05D005388 ORTHO05D006281 7.3e-58 228.4 174 66.7
HanXRQChr12g0373991 Helianthus annuus HOM05D005388 ORTHO05D006281 9.6e-58 228.0 257 51.0
HanXRQChr12g0374001 Helianthus annuus HOM05D005388 ORTHO05D006281 9.6e-58 228.0 257 51.0
Ah.00g000100 Amaranthus hybridus HOM05D005388 ORTHO05D006281 1.6e-57 227.3 175 67.4
Actinidia02320 Actinidia chinensis HOM05D005388 ORTHO05D006281 2.8e-57 226.5 174 63.8
Lalb_Chr22g0358501 Lupinus albus HOM05D005388 ORTHO05D006281 2.8e-57 226.5 176 63.6
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.6e-57 226.1 256 49.2
Phvul.001G115300 Phaseolus vulgaris HOM05D005388 ORTHO05D006281 3.6e-57 226.1 176 63.6
Thecc.06G231900 Theobroma cacao HOM05D005388 ORTHO05D006281 3.6e-57 226.1 174 64.4
Manes.03G134302 Manihot esculenta HOM05D005388 ORTHO05D006281 8.1e-57 224.9 176 64.8
Duzib160G0783 Durio zibethinus HOM05D005388 ORTHO05D006281 1.1e-56 224.6 174 64.4
Migut.M01387 Erythranthe guttata HOM05D005388 ORTHO05D006281 1.1e-56 224.6 237 52.7
FAN04G2939 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.1e-56 224.6 312 41.7
Prupe.4G012000 Prunus persica HOM05D005388 ORTHO05D006281 1.1e-56 224.6 229 53.7
Ciclev10016118m.g Citrus clementina HOM05D005388 ORTHO05D006281 1.4e-56 224.2 175 63.4
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.8e-56 223.8 255 49.0
SGA_v2.0_scaffold49G18245 Striga asiatica HOM05D005388 ORTHO05D006281 1.8e-56 223.8 176 64.8
CSS0028564 Camellia sinensis var. sinensis HOM05D005388 ORTHO05D006281 3.1e-56 223.0 174 64.9
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.2e-56 222.2 255 49.0
TAR624G0708 Trochodendron aralioides HOM05D005388 ORTHO05D006281 6.9e-56 221.9 174 64.4
vmacro03650 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 6.9e-56 221.9 226 53.5
Cpa.g.sc89.56 Carica papaya HOM05D005388 ORTHO05D006281 1.2e-55 221.1 175 61.7
CiPaw.09G101500 Carya illinoinensis HOM05D005388 ORTHO05D006281 1.2e-55 221.1 174 63.2
DCAR_027849 Daucus carota HOM05D005388 ORTHO05D006281 1.2e-55 221.1 235 53.2
Os08g0500900 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 1.2e-55 221.1 174 63.2
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.5e-55 220.7 256 48.8
Medtr1g007170 Medicago truncatula HOM05D005388 ORTHO05D006281 1.5e-55 220.7 178 62.9
TPR.G17170 Trifolium pratense HOM05D005388 ORTHO05D006281 1.5e-55 220.7 175 64.6
Sabra16G0117800 Salix brachista HOM05D005388 ORTHO05D006281 2.0e-55 220.3 174 62.6
PSO339G1452 Papaver somniferum HOM05D005388 ORTHO05D006281 2.6e-55 219.9 175 63.4
Potri.012G107500 Populus trichocarpa HOM05D005388 ORTHO05D006281 3.4e-55 219.5 175 62.9
Atru.chr1.2476 Acer truncatum HOM05D005388 ORTHO05D006281 4.4e-55 219.2 176 64.2
Nitab4.5_0000143g0400 Nicotiana tabacum HOM05D005388 ORTHO05D006281 4.4e-55 219.2 175 62.9
CANSAT56G1966 Cannabis sativa HOM05D005388 ORTHO05D006281 5.8e-55 218.8 174 63.2
arahy.Tifrunner.gnm1.ann1.KLAQ17 Arachis hypogaea HOM05D005388 ORTHO05D006281 7.6e-55 218.4 177 62.1
MELO3C024353.2 Cucumis melo HOM05D005388 ORTHO05D006281 7.6e-55 218.4 176 62.5
Sed0023635 Sechium edule HOM05D005388 ORTHO05D006281 9.9e-55 218.0 175 62.3
Lj1g0004963 Lotus japonicus HOM05D005388 ORTHO05D006281 1.7e-54 217.2 176 61.9
Psat6g035160 Pisum sativum HOM05D005388 ORTHO05D006281 1.7e-54 217.2 175 62.9
CARHR030700 Cardamine hirsuta HOM05D005388 ORTHO05D006281 2.2e-54 216.9 176 62.5
Lsat_1_v5_gn_5_121860 Lactuca sativa HOM05D005388 ORTHO05D006281 2.2e-54 216.9 176 59.1
THA.LOC104812711 Tarenaya hassleriana HOM05D005388 ORTHO05D006281 2.2e-54 216.9 175 60.6
Haze_06907 Corylus avellana HOM05D005388 ORTHO05D006281 2.9e-54 216.5 185 61.1
PGSC0003DMG400013269 Solanum tuberosum HOM05D005388 ORTHO05D006281 2.9e-54 216.5 176 61.4
AT1G31220 Arabidopsis thaliana HOM05D005388 ORTHO05D006281 3.8e-54 216.1 248 48.8
MD10G1330400 Malus domestica HOM05D005388 ORTHO05D006281 3.8e-54 216.1 179 59.8
Solyc11g012100.2 Solanum lycopersicum HOM05D005388 ORTHO05D006281 3.8e-54 216.1 175 61.7
PSO384G2339 Papaver somniferum HOM05D005388 ORTHO05D006281 4.9e-54 215.7 175 62.9
Sopen11g006890 Solanum pennellii HOM05D005388 ORTHO05D006281 4.9e-54 215.7 175 61.7
CsaV3_7G034450 Cucumis sativus L. HOM05D005388 ORTHO05D006281 6.4e-54 215.3 176 61.9
VMungo0647G0909 Vigna mungo HOM05D005388 ORTHO05D006281 6.4e-54 215.3 169 63.3
ClCG09G000980 Citrullus lanatus HOM05D005388 ORTHO05D006281 8.4e-54 214.9 175 62.3
Glyma.16G037200 Glycine max HOM05D005388 ORTHO05D006281 8.4e-54 214.9 176 62.5
Os05g0270800 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 8.4e-54 214.9 174 60.3
Aqoxy7G03349 Aquilegia oxysepala HOM05D005388 ORTHO05D006281 1.1e-53 214.5 175 64.0
AL1G49260 Arabidopsis lyrata HOM05D005388 ORTHO05D006281 1.1e-53 214.5 176 61.9
Peaxi162Scf00558g00317 Petunia axillaris HOM05D005388 ORTHO05D006281 1.1e-53 214.5 176 62.5
arahy.Tifrunner.gnm1.ann1.506A6S Arachis hypogaea HOM05D005388 ORTHO05D006281 1.4e-53 214.2 177 60.5
Ca_19224_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 3.2e-53 213.0 182 58.8
Rhsim04G0089100 Rhododendron simsii HOM05D005388 ORTHO05D006281 3.2e-53 213.0 206 55.3
arahy.Tifrunner.gnm1.ann1.UC4N4Q Arachis hypogaea HOM05D005388 ORTHO05D006281 4.2e-53 212.6 177 61.0
Sp1g27030 Schrenkiella parvula HOM05D005388 ORTHO05D006281 4.2e-53 212.6 176 61.4
PGR044G2560 Punica granatum HOM05D005388 ORTHO05D006281 7.1e-53 211.8 176 62.5
TPR.G24522 Trifolium pratense HOM05D005388 ORTHO05D006281 7.1e-53 211.8 175 62.9
Cc09_g05060 Coffea canephora HOM05D005388 ORTHO05D006281 9.3e-53 211.5 257 49.8
Thhalv10008369m.g Eutrema salsugineum HOM05D005388 ORTHO05D006281 1.2e-52 211.1 178 60.1
AL2G29970 Arabidopsis lyrata HOM05D005388 ORTHO05D006281 1.6e-52 210.7 229 52.4
ECA234G3218 Erigeron canadensis HOM05D005388 ORTHO05D006281 1.6e-52 210.7 175 58.3
vmacro03839 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 2.1e-52 210.3 258 48.4
Glyma.19G115900 Glycine max HOM05D005388 ORTHO05D006281 2.7e-52 209.9 176 61.9
Carub.0001s2962 Capsella rubella HOM05D005388 ORTHO05D006281 3.5e-52 209.5 176 60.8
Cc09_g05080 Coffea canephora HOM05D005388 ORTHO05D006281 7.8e-52 208.4 257 49.4
BolC5t31778H Brassica oleracea HOM05D005388 ORTHO05D006281 2.3e-51 206.8 176 60.2
MD03G1153200 Malus domestica HOM05D005388 ORTHO05D006281 2.3e-51 206.8 179 59.8
Zm00001eb082710 Zea mays HOM05D005388 ORTHO05D006281 3.0e-51 206.5 174 59.8
A09p35020 Brassica napus HOM05D005388 ORTHO05D006281 1.5e-50 204.1 176 60.2
BraA09t39033Z Brassica rapa HOM05D005388 ORTHO05D006281 1.5e-50 204.1 176 60.2
Aa31LG9G16020 Aethionema arabicum HOM05D005388 ORTHO05D006281 1.9e-50 203.8 175 60.6
BcaB07g32784 Brassica carinata HOM05D005388 ORTHO05D006281 2.5e-50 203.4 176 59.1
Actinidia26868 Actinidia chinensis HOM05D005388 ORTHO05D006281 3.3e-50 203.0 222 52.3
ATR0561G011 Amborella trichopoda HOM05D005388 ORTHO05D006281 3.3e-50 203.0 174 59.8
BcaC05g27152 Brassica carinata HOM05D005388 ORTHO05D006281 4.3e-50 202.6 176 59.1
C05p30410 Brassica napus HOM05D005388 ORTHO05D006281 5.6e-50 202.2 176 59.1
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 7.3e-50 201.8 174 59.2
MSTRG.16020 Avicennia marina HOM05D005388 ORTHO05D006281 9.6e-50 201.4 164 62.8
Haze_05515 Corylus avellana HOM05D005388 ORTHO05D006281 3.6e-49 199.5 195 56.4
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 8.4e-46 188.3 171 55.6
Ca_03362_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.4e-45 187.6 161 58.4
Mapoly0084s0080 Marchantia polymorpha HOM05D005388 ORTHO05D006281 5.4e-45 185.7 167 58.1
Nn1g07342 Nelumbo nucifera HOM05D005388 ORTHO05D006281 1.3e-43 181.0 155 62.6
CBR_g45412 Chara braunii HOM05D005388 ORTHO05D006281 5.1e-43 179.1 164 54.9
Pp3c13_14970 Physcomitrium patens HOM05D005388 ORTHO05D006281 2.5e-42 176.8 174 52.3
SMO353G0366 Selaginella moellendorffii HOM05D005388 ORTHO05D006281 9.6e-42 174.9 169 53.3
Rhsim04G0088200 Rhododendron simsii HOM05D005388 ORTHO05D006281 3.1e-40 169.9 140 62.1
Duzib235G1331 Durio zibethinus HOM05D005388 ORTHO05D006281 5.8e-39 165.6 138 63.0
DCAR_016081 Daucus carota HOM05D005388 ORTHO05D006281 9.9e-39 164.9 137 62.0
Os08g0501132 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 1.3e-38 164.5 138 62.3
CDE04G0494 Ceratophyllum demersum HOM05D005388 ORTHO05D006281 2.4e-37 160.2 174 49.4
SalBow8G2877 Salvia bowleyana HOM05D005388 ORTHO05D006281 9.3e-37 158.3 140 60.7
Nitab4.5_0001198g0130 Nicotiana tabacum HOM05D005388 ORTHO05D006281 4.6e-36 156.0 139 59.0
Rhsim04G0092900 Rhododendron simsii HOM05D005388 ORTHO05D006281 1.0e-35 154.8 101 72.3
Cre12.g550700 Chlamydomonas reinhardtii HOM05D005388 ORTHO05D006281 2.3e-35 153.7 169 49.1
TAR629G3434 Trochodendron aralioides HOM05D005388 ORTHO05D006281 5.6e-34 149.1 92 73.9
Hund02539 Selenicereus undatus HOM05D005388 ORTHO05D006281 4.8e-33 146.0 155 54.2
HPP92_008146 Vanilla planifolia HOM05D005388 ORTHO05D006281 4.0e-32 142.9 94 69.1
arahy.Tifrunner.gnm1.ann1.NIL5QZ Arachis hypogaea HOM05D005388 ORTHO05D006281 1.2e-31 141.4 96 69.8
Lj2A262G50 Lonicera japonica HOM05D005388 ORTHO05D006281 7.6e-31 138.7 159 49.1
MCO11G941 Micromonas commoda HOM05D005388 ORTHO05D006281 5.1e-27 125.9 171 43.3
Lsat_1_v5_gn_3_44480 Lactuca sativa HOM05D005388 ORTHO05D006281 2.6e-23 113.6 154 40.9
Sc04g0003960 Simmondsia chinensis HOM05D005388 ORTHO05D006281 5.0e-22 109.4 61 83.6
PRCOL_00005535 Prasinoderma coloniale HOM05D005388 ORTHO05D006281 7.4e-18 95.5 94 50.0
AagrBONN_evm.TU.Sc2ySwM_369.550 Anthoceros agrestis HOM05D005388 ORTHO05D006281 2.5e-13 80.5 61 63.9
Haze_13876 Corylus avellana HOM05D005388 ORTHO05D006281 5.5e-13 79.3 93 48.4
Migut.H01601 Erythranthe guttata HOM05D005388 ORTHO05D006281 3.6e-12 76.6 117 41.0
Rhsim04G0088400 Rhododendron simsii HOM05D005388 ORTHO05D006281 1.5e-10 71.2 111 40.5
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 4.4e-10 69.7 140 37.1
FAN04G2929 Fragaria x ananassa HOM05D001252 ORTHO05D006281 9.7e-10 68.6 159 31.4
FAN11G1084 Fragaria x ananassa HOM05D001252 ORTHO05D006281 9.7e-10 68.6 159 31.4
FAN13G0148 Fragaria x ananassa HOM05D001252 ORTHO05D001263 9.7e-10 68.6 159 31.4
FAN24G1366 Fragaria x ananassa HOM05D001252 ORTHO05D006281 9.7e-10 68.6 159 31.4
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.3e-09 68.2 162 29.0
Haze_05509 Corylus avellana HOM05D005388 ORTHO05D006281 8.2e-09 65.5 37 75.7
SalBow1G2889 Salvia bowleyana HOM05D035322 ORTHO05D006281 1.4e-08 64.7 39 71.8
FAN11G2435 Fragaria x ananassa HOM05D000566 ORTHO05D000686 2.6e-07 60.5 37 67.6


User provided reference genes

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