Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 0.0e+00 1193.7 632 100.0
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.4e-247 859.8 662 70.5
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.9e-241 839.3 716 65.8
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 5.7e-230 801.2 804 57.5
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 1.0e-215 753.8 761 56.0
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 1.6e-208 729.9 762 55.2
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.9e-189 666.0 758 51.1
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 2.5e-185 652.9 768 50.4
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 1.7e-181 640.2 755 49.4
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 3.8e-181 639.0 756 49.6
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 3.2e-180 636.0 771 48.1
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 1.3e-178 630.6 762 48.2
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 2.5e-177 626.3 767 49.0
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 5.6e-177 625.2 757 48.0
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 1.2e-176 624.0 761 47.6
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 2.1e-176 623.2 764 47.8
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 8.1e-176 621.3 755 48.1
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 1.1e-175 620.9 766 47.8
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 4.0e-175 619.0 764 47.4
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 5.2e-175 618.6 764 47.3
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 9.0e-175 617.8 808 46.5
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.6e-174 616.3 757 48.2
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 3.4e-174 615.9 764 47.6
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 9.9e-174 614.4 774 47.4
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 3.8e-173 612.5 759 46.4
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.1e-172 610.9 765 46.4
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 1.4e-172 610.5 769 46.2
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 2.7e-171 606.3 781 46.5
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.3e-170 603.2 756 47.2
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.6e-170 601.7 769 46.6
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 1.5e-169 600.5 749 47.3
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 7.3e-169 598.2 761 47.7
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 3.6e-168 595.9 769 45.6
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 3.6e-168 595.9 763 46.3
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 1.8e-167 593.6 737 48.4
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.8e-167 593.6 766 46.0
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 2.4e-167 593.2 764 46.2
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 5.3e-167 592.0 765 46.0
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 9.0e-167 591.3 687 50.2
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 7.6e-166 588.2 682 51.6
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 5.4e-164 582.0 762 45.3
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.2e-163 580.9 766 45.8
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.6e-163 580.5 767 44.7
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 3.5e-163 579.3 774 45.7
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 3.5e-163 579.3 775 44.9
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 6.7e-162 575.1 767 45.2
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 8.7e-162 574.7 767 45.2
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 3.3e-161 572.8 765 44.7
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 7.4e-161 571.6 757 46.0
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 1.3e-160 570.9 713 47.5
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 2.8e-160 569.7 766 44.6
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 3.7e-160 569.3 758 44.2
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 6.2e-160 568.5 759 45.2
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 8.1e-160 568.2 761 44.5
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 8.1e-160 568.2 765 44.4
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 2.4e-159 566.6 792 44.4
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 9.0e-159 564.7 750 44.0
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 5.8e-158 562.0 765 44.3
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 7.6e-158 561.6 762 44.2
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 7.6e-158 561.6 757 45.8
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 1.3e-157 560.8 764 43.7
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 2.2e-157 560.1 774 43.5
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 2.2e-157 560.1 762 44.0
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 3.8e-157 559.3 773 43.3
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 6.4e-157 558.5 765 44.8
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 8.4e-157 558.1 768 43.9
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 2.4e-156 556.6 764 43.2
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 1.6e-155 553.9 713 46.3
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 7.9e-155 551.6 765 44.1
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 1.0e-154 551.2 764 43.2
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 2.3e-154 550.1 759 43.6
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 3.3e-153 546.2 761 43.4
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 7.4e-153 545.0 736 44.7
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 2.8e-152 543.1 787 42.4
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 2.8e-152 543.1 765 43.0
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 1.1e-151 541.2 786 42.2
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 3.4e-150 536.2 716 45.0
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 4.9e-149 532.3 780 41.9
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 8.4e-149 531.6 771 42.2
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 8.4e-149 531.6 690 46.2
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 1.1e-148 531.2 780 41.7
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 2.7e-147 526.6 787 42.1
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 3.1e-143 513.1 737 44.1
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.2e-142 511.1 763 41.5
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 6.5e-141 505.4 751 41.5
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 8.5e-141 505.0 576 49.1
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 1.5e-137 494.2 564 50.4
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 4.3e-137 492.7 572 48.8
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.0e-134 483.8 746 40.2
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.2e-133 480.3 718 41.5
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 6.5e-133 478.8 713 41.8
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 9.4e-132 474.9 700 44.3
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 7.9e-131 471.9 569 48.0
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 1.0e-130 471.5 735 40.3
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 8.8e-130 468.4 725 43.3
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 2.6e-129 466.8 569 48.7
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 2.2e-128 463.8 569 48.2
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 5.5e-124 449.1 654 40.4
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 7.2e-124 448.7 567 45.9
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 2.1e-123 447.2 637 43.0
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 1.4e-119 434.5 572 44.9
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 9.1e-119 431.8 516 49.0
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.2e-118 431.4 492 50.0
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 7.2e-116 422.2 427 55.3
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 3.8e-109 399.8 528 45.6
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 4.7e-99 366.3 285 64.6
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 4.7e-99 366.3 581 39.9
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 7.5e-97 359.0 751 33.6
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.6e-94 351.3 510 40.8
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 1.8e-90 337.8 617 36.1
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 6.6e-85 319.3 294 56.1
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 1.4e-79 301.6 263 59.7
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 9.2e-79 298.9 434 44.5
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 1.0e-77 295.4 342 47.4
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 3.2e-71 273.9 370 41.4
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 7.1e-71 272.7 290 52.4
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 8.6e-69 265.8 314 48.1
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.1e-68 265.4 388 44.3
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.6e-67 261.5 506 36.4
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 3.1e-66 257.3 461 38.4
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 3.0e-61 240.7 170 68.8
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 4.7e-59 233.4 803 24.9
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 3.1e-58 230.7 204 57.4
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 6.9e-50 203.0 715 26.3
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 4.2e-47 193.7 349 31.8
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 1.3e-45 188.7 181 54.7
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 6.2e-43 179.9 746 24.1
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 1.1e-42 179.1 288 37.2
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 1.8e-42 178.3 250 44.0
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 2.4e-42 177.9 141 66.7
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.9e-31 141.7 373 33.8
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 9.3e-31 139.4 367 34.1
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 2.5e-28 131.3 244 36.5
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 6.3e-27 126.7 186 42.5
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.1e-26 125.9 203 38.4
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 7.7e-25 119.8 109 60.6
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 8.5e-24 116.3 184 37.5
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 2.5e-23 114.8 187 39.0
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 6.3e-19 100.1 78 61.5
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 8.2e-19 99.8 405 26.2
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.1e-14 83.6 72 54.2
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 1.7e-11 75.5 53 69.8
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-10 72.8 64 50.0
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 9.1e-10 69.7 244 28.7
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 1.5e-09 68.9 80 50.0
Cfa026774 Carpinus fangiana HOM05D004734 ORTHO05D126311 4.5e-09 67.4 251 24.7
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 4.5e-09 67.4 55 63.6
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-07 62.4 65 40.0
PRCOL_00004220 Prasinoderma coloniale HOM05D004734 ORTHO05D006019 3.6e-06 57.8 65 40.0


User provided reference genes

Program Settings