Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 2.0e-253 878.6 442 100.0
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 5.4e-118 428.7 425 55.3
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 7.0e-118 428.3 414 55.3
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 1.2e-117 427.6 418 54.5
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 1.2e-117 427.6 438 53.0
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 2.7e-117 426.4 425 55.1
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.5e-115 420.6 395 60.3
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 3.3e-115 419.5 449 54.1
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 3.6e-114 416.0 415 53.7
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 1.4e-113 414.1 410 54.1
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 2.3e-113 413.3 437 52.9
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 4.0e-113 412.5 429 53.8
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 5.2e-113 412.1 441 54.6
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 3.4e-112 409.5 399 55.6
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 1.3e-111 407.5 421 52.0
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 4.9e-111 405.6 425 53.4
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 6.4e-111 405.2 433 51.7
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 8.3e-111 404.8 427 52.9
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 8.3e-111 404.8 407 54.8
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 1.4e-110 404.1 403 52.6
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 2.4e-110 403.3 403 53.1
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 3.5e-109 399.4 423 51.8
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 4.6e-109 399.1 407 52.8
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.0e-108 397.9 392 54.6
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 3.9e-108 396.0 445 50.8
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 3.9e-108 396.0 433 51.7
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 5.1e-108 395.6 397 51.6
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 2.5e-107 393.3 435 49.9
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 7.3e-107 391.7 450 50.4
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 2.8e-106 389.8 406 52.2
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 4.7e-106 389.0 417 51.3
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 1.8e-105 387.1 424 50.7
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 5.2e-105 385.6 401 52.6
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 5.2e-105 385.6 427 50.8
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 5.2e-105 385.6 403 52.6
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 6.8e-105 385.2 386 52.3
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 6.8e-105 385.2 426 50.5
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 7.6e-104 381.7 426 50.0
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 2.2e-103 380.2 434 49.3
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 4.9e-103 379.0 412 51.2
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 4.9e-103 379.0 417 49.4
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 1.9e-102 377.1 447 48.8
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 9.2e-102 374.8 428 48.8
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 2.7e-101 373.2 404 50.7
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 7.8e-101 371.7 446 46.9
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 1.3e-100 370.9 414 46.4
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 3.9e-100 369.4 425 48.5
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 1.5e-99 367.5 417 48.4
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 1.5e-99 367.5 401 51.9
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 2.5e-99 366.7 409 48.2
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 5.6e-99 365.5 428 50.5
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 7.3e-99 365.2 389 50.6
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 1.2e-98 364.4 398 53.8
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 6.2e-98 362.1 320 56.2
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 8.1e-98 361.7 406 51.2
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 1.3e-95 354.4 423 48.9
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 2.9e-95 353.2 399 50.6
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 6.4e-95 352.1 419 47.7
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 6.4e-95 352.1 405 50.9
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 6.4e-95 352.1 427 45.7
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.1e-94 351.3 407 49.4
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 1.1e-94 351.3 406 47.3
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 1.9e-94 350.5 419 46.5
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 5.4e-94 349.0 423 46.6
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 7.1e-94 348.6 395 47.1
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.1e-93 347.1 376 51.6
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 3.0e-92 343.2 412 48.3
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 3.0e-92 343.2 398 48.2
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.9e-91 340.5 369 52.0
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 7.3e-91 338.6 424 45.5
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 7.3e-91 338.6 399 49.1
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 2.8e-90 336.7 416 45.4
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 2.6e-88 330.1 431 44.5
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 5.8e-88 328.9 405 49.6
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 7.6e-88 328.6 290 56.2
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 3.8e-87 326.2 417 44.6
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 3.8e-87 326.2 440 45.0
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 4.9e-87 325.9 447 43.2
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 5.4e-86 322.4 438 43.6
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 7.1e-86 322.0 442 43.4
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 2.1e-85 320.5 446 43.0
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 1.3e-84 317.8 446 42.8
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 1.3e-84 317.8 438 42.2
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 3.9e-84 316.2 443 42.7
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 5.1e-84 315.8 389 44.5
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 8.7e-84 315.1 385 44.4
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 1.1e-83 314.7 234 62.4
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 7.3e-83 312.0 393 49.4
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.6e-82 310.8 329 53.2
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.6e-82 310.8 412 46.4
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 2.1e-82 310.5 448 40.0
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 2.8e-82 310.1 280 57.1
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 8.1e-82 308.5 450 40.7
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.4e-81 307.8 448 41.3
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 1.8e-81 307.4 452 40.3
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 1.8e-81 307.4 388 44.6
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 9.0e-81 305.1 336 52.1
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 4.2e-78 296.2 287 53.3
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 4.2e-78 296.2 426 41.1
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 9.3e-78 295.0 383 43.3
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.2e-77 294.7 378 43.9
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 2.5e-75 287.0 301 49.8
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 3.3e-75 286.6 423 40.2
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 3.7e-74 283.1 394 42.1
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 4.8e-74 282.7 305 49.5
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 1.8e-73 280.8 393 42.7
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 1.3e-71 274.6 427 39.6
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 3.2e-70 270.0 350 42.0
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 9.3e-70 268.5 403 42.9
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 3.9e-68 263.1 329 43.8
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 5.1e-68 262.7 298 46.0
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.9e-67 260.8 382 40.6
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 3.1e-65 253.4 289 46.4
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.2e-64 251.5 179 66.5
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 6.7e-60 235.7 355 40.8
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 7.4e-59 232.3 304 41.8
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 5.3e-57 226.1 348 42.2
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.2e-56 224.9 191 56.0
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 5.0e-55 219.5 258 49.2
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 8.8e-52 208.8 198 52.5
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 2.0e-51 207.6 190 54.7
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 5.5e-46 189.5 271 45.0
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 7.7e-40 169.1 247 44.9
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 2.9e-39 167.2 138 55.8
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 2.7e-37 160.6 225 43.6
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.8e-31 140.2 100 69.0
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.6e-29 133.7 100 65.0
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 4.0e-28 130.2 99 57.6
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 5.2e-28 129.8 135 48.9
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 2.6e-27 127.5 98 58.2
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.4e-25 121.7 121 48.8
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 2.4e-25 120.9 172 44.2
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 2.4e-25 120.9 98 56.1
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 3.5e-24 117.1 99 58.6
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 3.8e-23 113.6 118 48.3
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 3.0e-20 104.0 130 48.5
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.4e-19 100.1 90 54.4
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 1.1e-17 95.5 100 49.0
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 1.5e-14 85.1 80 46.2
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 1.9e-06 58.2 141 36.9
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 5.6e-06 56.6 42 61.9


User provided reference genes

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