Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 9.7e-112 406.8 195 100.0
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 8.4e-23 111.3 81 66.7
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 3.2e-22 109.4 81 65.4
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 4.2e-22 109.0 81 64.2
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 4.2e-22 109.0 81 64.2
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 7.1e-22 108.2 82 63.4
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 7.1e-22 108.2 81 65.4
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 9.3e-22 107.8 81 64.2
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 1.2e-21 107.5 81 61.7
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.6e-21 107.1 82 62.2
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.6e-21 107.1 82 63.4
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.6e-21 107.1 82 62.2
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.6e-21 107.1 82 62.2
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.6e-21 107.1 82 62.2
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.6e-21 107.1 80 65.0
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 2.1e-21 106.7 80 65.0
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.1e-21 106.7 88 61.4
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 2.1e-21 106.7 81 63.0
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 2.7e-21 106.3 81 64.2
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 2.7e-21 106.3 83 61.4
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 2.7e-21 106.3 80 65.0
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 3.5e-21 105.9 81 64.2
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 3.5e-21 105.9 81 63.0
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 4.6e-21 105.5 86 60.5
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 4.6e-21 105.5 80 63.8
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 4.6e-21 105.5 82 59.8
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 6.0e-21 105.1 81 63.0
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 6.0e-21 105.1 81 63.0
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 6.0e-21 105.1 81 64.2
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 6.0e-21 105.1 81 64.2
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 6.0e-21 105.1 81 61.7
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 7.9e-21 104.8 81 61.7
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 7.9e-21 104.8 81 63.0
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 7.9e-21 104.8 81 63.0
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.0e-20 104.4 82 61.0
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 1.0e-20 104.4 81 64.2
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 1.0e-20 104.4 80 62.5
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 1.3e-20 104.0 81 63.0
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 1.3e-20 104.0 89 57.3
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 1.3e-20 104.0 81 63.0
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 1.3e-20 104.0 80 62.5
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 1.3e-20 104.0 81 63.0
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 1.3e-20 104.0 83 62.7
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 1.3e-20 104.0 81 63.0
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.8e-20 103.6 81 59.3
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.8e-20 103.6 80 62.5
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.8e-20 103.6 79 63.3
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 1.8e-20 103.6 81 61.7
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 2.3e-20 103.2 81 64.2
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 2.3e-20 103.2 81 61.7
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 2.3e-20 103.2 81 61.7
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 2.3e-20 103.2 84 58.3
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 3.0e-20 102.8 136 44.9
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 3.0e-20 102.8 81 60.5
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 3.9e-20 102.4 81 60.5
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 3.9e-20 102.4 80 60.0
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 3.9e-20 102.4 81 61.7
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 3.9e-20 102.4 81 61.7
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 5.1e-20 102.1 81 60.5
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 5.1e-20 102.1 81 60.5
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 5.1e-20 102.1 81 60.5
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 6.7e-20 101.7 81 61.7
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 6.7e-20 101.7 81 61.7
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 6.7e-20 101.7 81 60.5
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 8.7e-20 101.3 90 57.8
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 8.7e-20 101.3 82 61.0
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 8.7e-20 101.3 82 61.0
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 8.7e-20 101.3 82 61.0
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 8.7e-20 101.3 81 61.7
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 8.7e-20 101.3 82 59.8
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 1.1e-19 100.9 82 59.8
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.1e-19 100.9 82 59.8
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.1e-19 100.9 81 59.3
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.1e-19 100.9 81 59.3
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 1.1e-19 100.9 81 60.5
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.5e-19 100.5 80 60.0
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 1.5e-19 100.5 81 60.5
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 1.9e-19 100.1 82 59.8
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 2.5e-19 99.8 82 58.5
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 3.3e-19 99.4 81 60.5
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 3.3e-19 99.4 81 59.3
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 3.3e-19 99.4 81 59.3
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 4.3e-19 99.0 82 59.8
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 4.3e-19 99.0 81 59.3
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 4.3e-19 99.0 82 59.8
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 4.3e-19 99.0 80 61.2
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 5.6e-19 98.6 82 57.3
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 5.6e-19 98.6 81 58.0
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 5.6e-19 98.6 106 50.0
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 5.6e-19 98.6 77 62.3
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 9.6e-19 97.8 81 58.0
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 1.3e-18 97.4 81 58.0
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.6e-18 97.1 81 58.0
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 1.1e-17 94.4 90 52.2
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.4e-17 94.0 85 54.1
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.8e-17 93.6 82 54.9
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 2.4e-17 93.2 80 57.5
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 2.4e-17 93.2 81 55.6
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 3.1e-17 92.8 81 54.3
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 5.3e-17 92.0 108 46.3
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.5e-16 90.5 77 57.1
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 2.0e-16 90.1 82 57.3
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 4.5e-16 89.0 102 47.1
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 1.7e-15 87.0 106 44.3
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 7.1e-14 81.6 75 52.0
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 9.3e-14 81.3 103 41.7
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 9.3e-14 81.3 90 45.6
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-13 79.0 82 46.3
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 1.5e-11 73.9 37 81.1
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 1.5e-11 73.9 39 82.1
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 5.6e-11 72.0 43 69.8
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 1.3e-10 70.9 74 44.6
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 1.3e-10 70.9 40 75.0
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 1.6e-10 70.5 36 80.6
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 4.8e-10 68.9 40 70.0
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 1.1e-09 67.8 73 43.8
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 4.5e-08 62.4 59 57.6
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 6.5e-07 58.5 63 52.4
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 3.2e-06 56.2 28 85.7
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 5.5e-06 55.5 79 38.0
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 7.1e-06 55.1 33 72.7


User provided reference genes

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