Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.1e-265 919.5 470 100.0
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 2.5e-113 413.3 338 66.9
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 2.3e-111 406.8 361 62.3
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 2.6e-110 403.3 306 69.6
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 3.1e-108 396.4 306 70.9
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 5.4e-108 395.6 310 70.0
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.0e-106 391.3 360 59.4
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 5.0e-106 389.0 361 58.7
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.9e-105 387.1 361 59.0
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 2.5e-105 386.7 361 59.0
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 5.6e-105 385.6 362 59.1
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 1.2e-104 384.4 395 54.7
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.6e-104 384.0 362 59.7
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 2.1e-104 383.6 363 57.6
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 2.8e-104 383.3 362 59.9
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.6e-104 382.9 363 59.5
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 8.0e-104 381.7 362 58.8
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 1.4e-103 380.9 363 59.2
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.4e-103 380.9 363 59.2
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 5.2e-103 379.0 361 57.9
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.2e-102 377.9 362 58.8
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 3.4e-102 376.3 362 58.0
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 5.8e-102 375.6 360 57.8
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 5.8e-102 375.6 360 58.1
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 2.2e-101 373.6 365 56.4
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 2.2e-101 373.6 361 56.8
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 1.1e-100 371.3 361 57.1
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 2.4e-100 370.2 362 57.7
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 7.8e-99 365.2 364 55.2
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 7.8e-99 365.2 362 55.5
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 1.7e-98 364.0 330 58.2
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 2.3e-98 363.6 363 56.5
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 5.0e-98 362.5 306 62.4
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 5.0e-98 362.5 302 63.6
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 6.6e-98 362.1 366 56.8
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 1.1e-97 361.3 361 55.7
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 1.9e-97 360.5 362 57.5
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 3.3e-97 359.8 364 53.8
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 7.3e-97 358.6 363 54.8
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 1.6e-96 357.5 369 56.6
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.1e-96 357.1 363 55.4
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 3.6e-96 356.3 363 56.7
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.3e-95 353.6 363 56.2
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 2.3e-95 353.6 363 54.8
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 5.2e-95 352.4 369 56.9
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 6.8e-95 352.1 369 54.2
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 8.9e-95 351.7 365 55.6
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 2.6e-94 350.1 398 51.3
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 5.8e-94 349.0 366 55.2
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 7.5e-94 348.6 367 55.6
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 9.8e-94 348.2 361 54.8
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 9.8e-94 348.2 363 54.8
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 1.7e-93 347.4 362 55.0
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 2.2e-93 347.1 363 54.5
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 2.9e-93 346.7 368 53.8
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.9e-93 345.9 367 54.5
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.9e-93 345.9 372 54.8
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 4.9e-93 345.9 364 54.1
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 8.3e-93 345.1 363 54.0
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 1.1e-92 344.7 366 53.0
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.9e-92 344.0 363 53.4
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 2.4e-92 343.6 362 53.9
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 2.4e-92 343.6 362 53.9
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 2.4e-92 343.6 334 55.1
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 2.4e-92 343.6 364 55.5
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 3.2e-92 343.2 368 52.7
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 7.1e-92 342.0 363 52.6
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 1.6e-91 340.9 369 51.8
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 2.1e-91 340.5 391 51.4
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 2.1e-91 340.5 368 54.9
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 6.0e-91 339.0 360 52.8
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 2.3e-90 337.0 394 49.7
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.1e-90 335.9 364 52.7
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 8.6e-90 335.1 367 51.5
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.1e-89 334.7 392 49.7
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 2.5e-89 333.6 398 50.8
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 3.3e-89 333.2 362 52.8
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 4.3e-89 332.8 307 57.0
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 7.3e-89 332.0 337 54.0
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 1.2e-88 331.3 365 52.1
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.6e-88 330.9 306 57.2
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 2.1e-88 330.5 307 58.6
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 3.6e-88 329.7 390 49.5
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 1.4e-87 327.8 309 57.0
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 1.8e-87 327.4 363 52.3
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 3.1e-87 326.6 337 53.4
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 4.0e-87 326.2 395 48.6
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 4.0e-87 326.2 395 49.4
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 5.2e-87 325.9 310 57.4
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 1.2e-86 324.7 309 55.3
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 1.2e-86 324.7 359 50.7
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 2.0e-86 323.9 360 50.0
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 4.4e-86 322.8 423 46.1
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 5.8e-86 322.4 395 49.1
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 9.9e-86 321.6 393 48.3
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 2.9e-85 320.1 371 49.1
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 4.9e-85 319.3 311 54.7
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 8.3e-85 318.5 378 51.3
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.4e-84 315.8 393 47.1
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.2e-83 314.7 392 46.9
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 2.1e-83 313.9 389 47.3
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 3.5e-83 313.2 362 52.2
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 5.1e-82 309.3 311 55.0
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 1.1e-81 308.1 363 52.1
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 9.6e-81 305.1 295 58.0
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 9.6e-81 305.1 311 55.0
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 9.6e-81 305.1 361 50.7
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 1.6e-80 304.3 310 53.9
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 1.1e-79 301.6 316 54.7
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 1.8e-79 300.8 298 55.0
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 3.1e-79 300.1 360 47.5
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 2.6e-78 297.0 316 53.8
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 1.9e-76 290.8 394 46.2
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 7.1e-76 288.9 367 46.6
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 2.7e-75 287.0 338 50.3
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 2.1e-72 277.3 363 45.7
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.9e-68 264.2 362 47.2
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 1.2e-62 245.0 245 58.4
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.5e-62 244.6 417 40.3
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.3e-61 241.5 325 47.4
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 1.7e-61 241.1 390 41.8
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 1.4e-60 238.0 268 48.1
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.8e-58 231.1 185 61.6
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 3.0e-58 230.3 362 43.9
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 1.6e-56 224.6 170 62.9
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 3.7e-56 223.4 331 41.7
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 4.0e-55 219.9 313 42.8
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 5.3e-55 219.5 320 45.6
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 1.1e-47 195.3 298 41.9
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 4.5e-46 189.9 120 74.2
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 1.3e-45 188.3 340 37.6
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 1.2e-35 155.2 165 50.9
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 2.5e-33 147.5 337 30.3
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 2.9e-29 134.0 198 41.4
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 2.7e-27 127.5 98 58.2
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 8.8e-26 122.5 80 66.2
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 8.8e-26 122.5 218 34.4
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 1.6e-19 101.7 50 90.0
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 3.0e-18 97.4 169 38.5
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 4.0e-18 97.1 291 26.8
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 3.7e-16 90.5 50 76.0
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.8e-15 88.2 130 44.6
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 3.1e-15 87.4 50 78.0
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 2.6e-14 84.3 50 70.0
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 3.2e-12 77.4 201 27.4
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 2.7e-06 57.8 101 36.6
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 4.5e-06 57.0 100 36.0


User provided reference genes

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