Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 1.2e-283 979.2 496 100.0
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 3.8e-112 409.5 311 65.9
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 3.2e-111 406.4 329 63.2
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 7.9e-110 401.7 331 60.4
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 7.9e-110 401.7 324 61.7
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 8.2e-107 391.7 325 60.3
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 7.7e-105 385.2 327 58.1
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 1.0e-104 384.8 331 59.2
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 5.0e-104 382.5 324 58.0
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 5.5e-103 379.0 312 59.9
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 4.6e-102 375.9 331 56.2
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 6.7e-101 372.1 330 58.5
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 7.4e-100 368.6 320 58.4
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 7.4e-100 368.6 326 55.8
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 1.7e-99 367.5 301 59.8
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 4.8e-99 365.9 326 55.8
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 9.1e-98 361.7 323 55.7
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 1.2e-97 361.3 327 56.6
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 1.0e-96 358.2 326 56.4
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 1.0e-96 358.2 333 55.9
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 2.2e-96 357.1 326 54.9
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 2.2e-96 357.1 319 56.1
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 5.0e-96 355.9 326 53.4
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 6.5e-96 355.5 326 53.1
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 6.5e-96 355.5 319 55.5
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 8.5e-96 355.1 326 53.4
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 1.1e-95 354.8 327 52.9
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.9e-95 354.0 319 56.4
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 2.5e-95 353.6 318 54.4
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 2.5e-95 353.6 330 56.7
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 4.2e-95 352.8 324 56.5
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 1.2e-94 351.3 311 56.3
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 1.8e-93 347.4 327 54.1
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 1.8e-93 347.4 336 54.2
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 2.3e-93 347.1 324 55.6
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 5.2e-93 345.9 330 54.2
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 5.2e-93 345.9 316 55.4
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 2.0e-92 344.0 330 53.9
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 2.6e-92 343.6 311 55.3
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 4.4e-92 342.8 330 53.9
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 5.7e-92 342.4 324 55.9
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 5.7e-92 342.4 327 52.9
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 9.7e-92 341.7 322 52.5
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 3.7e-91 339.7 327 53.5
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 3.7e-91 339.7 317 53.0
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 4.8e-91 339.3 324 54.3
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 5.3e-90 335.9 317 53.3
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 1.6e-89 334.3 321 52.6
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 2.6e-89 333.6 324 53.1
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 4.5e-89 332.8 325 52.3
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 4.5e-89 332.8 304 55.9
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 1.0e-88 331.6 329 52.0
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 1.3e-88 331.3 325 54.5
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 5.0e-88 329.3 316 53.2
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 1.1e-87 328.2 345 50.1
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 2.5e-87 327.0 326 51.5
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 7.2e-87 325.5 324 52.8
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 1.2e-86 324.7 323 52.0
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 1.6e-86 324.3 316 52.8
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 2.1e-86 323.9 329 50.8
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 6.1e-86 322.4 329 50.5
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 3.0e-85 320.1 331 52.3
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 6.7e-85 318.9 331 52.3
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 2.0e-84 317.4 333 51.4
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 3.3e-84 316.6 321 53.0
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 5.7e-84 315.8 325 51.1
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 5.7e-84 315.8 316 51.3
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 5.7e-84 315.8 330 50.3
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 7.5e-84 315.5 316 51.6
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 2.2e-83 313.9 316 50.9
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 3.7e-83 313.2 316 50.9
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 3.7e-83 313.2 330 49.7
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 4.8e-83 312.8 316 50.3
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 1.1e-82 311.6 316 50.9
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 4.1e-82 309.7 318 48.4
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 9.1e-82 308.5 331 51.4
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 1.6e-81 307.8 326 50.6
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 3.5e-81 306.6 326 50.3
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 3.5e-81 306.6 321 50.8
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 3.5e-81 306.6 321 50.8
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 3.5e-81 306.6 321 50.8
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 5.9e-81 305.8 336 48.8
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 5.9e-81 305.8 290 51.4
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 8.5e-80 302.0 230 66.5
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 5.5e-79 299.3 332 49.1
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 1.6e-78 297.7 318 46.9
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 1.7e-75 287.7 316 48.4
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 3.5e-73 280.0 325 45.2
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 2.9e-72 276.9 291 49.5
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 5.2e-69 266.2 313 44.4
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 8.0e-62 242.3 327 41.9
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 7.5e-60 235.7 220 54.5
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 2.5e-55 220.7 215 54.0
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 1.7e-48 198.0 161 59.0
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 2.3e-45 187.6 152 59.2
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 1.0e-40 172.2 167 52.1
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 2.9e-35 154.1 99 71.7
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 2.3e-32 144.4 113 62.8
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 3.0e-32 144.1 163 50.9
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 3.9e-32 143.7 219 42.0
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 4.3e-23 113.6 183 38.3
Hund23948 Selenicereus undatus HOM05D016232 ORTHO05D023135 1.6e-22 111.7 63 87.3
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 1.8e-21 108.2 127 42.5
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 6.9e-21 106.3 145 43.4
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 1.0e-16 92.4 103 52.4
Hund20086 Selenicereus undatus HOM05D016232 ORTHO05D023135 8.1e-14 82.8 57 71.9
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 3.9e-08 63.9 136 28.7
Migut.D01063 Erythranthe guttata HOM05D000891 ORTHO05D000761 4.3e-07 60.5 170 30.6
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 7.4e-07 59.7 255 22.7
PSO541G2034 Papaver somniferum HOM05D000424 ORTHO05D000355 2.1e-06 58.2 185 24.3
Carub.0007s0364 Capsella rubella HOM05D000891 ORTHO05D000761 2.8e-06 57.8 117 29.9
PSO170G2530 Papaver somniferum HOM05D008994 ORTHO05D010954 4.8e-06 57.0 101 31.7


User provided reference genes

Program Settings