Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 5.3e-119 431.0 214 100.0
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 4.5e-62 241.9 203 65.5
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 7.7e-62 241.1 204 65.2
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 5.0e-61 238.4 203 65.0
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 6.8e-58 228.0 188 63.3
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 3.1e-55 219.2 209 59.3
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.3e-53 213.8 207 57.5
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.9e-53 212.6 203 59.1
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.5e-52 210.3 153 71.9
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.5e-52 209.5 161 65.8
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 4.2e-52 208.8 205 55.6
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 2.7e-51 206.1 205 56.6
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 2.7e-51 206.1 161 67.7
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 3.6e-51 205.7 201 57.2
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 3.6e-51 205.7 200 57.5
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 1.8e-50 203.4 153 66.7
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 1.8e-50 203.4 158 67.1
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.8e-50 203.4 115 83.5
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.8e-50 203.4 115 83.5
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.0e-50 202.6 143 71.3
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.0e-50 202.6 143 71.3
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 3.0e-50 202.6 133 74.4
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 4.0e-50 202.2 155 65.8
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 4.0e-50 202.2 116 77.6
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 5.2e-50 201.8 170 62.9
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 5.2e-50 201.8 152 63.8
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 5.2e-50 201.8 116 81.9
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 8.8e-50 201.1 123 75.6
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 8.8e-50 201.1 162 63.0
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 8.8e-50 201.1 116 81.0
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.2e-49 200.7 116 81.0
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.5e-49 200.3 205 54.6
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 1.5e-49 200.3 173 61.3
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.5e-49 200.3 116 81.0
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.5e-49 200.3 116 81.0
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.5e-49 200.3 141 70.9
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 2.0e-49 199.9 127 76.4
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.6e-49 199.5 116 81.0
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 3.4e-49 199.1 151 67.5
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 4.4e-49 198.7 146 66.4
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 4.4e-49 198.7 116 81.0
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 4.4e-49 198.7 121 76.9
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 4.4e-49 198.7 127 74.0
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 5.7e-49 198.4 203 53.2
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 5.7e-49 198.4 158 65.8
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 5.7e-49 198.4 114 80.7
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 5.7e-49 198.4 152 66.4
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 7.5e-49 198.0 203 56.2
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 7.5e-49 198.0 156 64.1
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 7.5e-49 198.0 118 78.0
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 9.8e-49 197.6 163 63.2
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 9.8e-49 197.6 153 65.4
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 9.8e-49 197.6 152 65.8
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 1.3e-48 197.2 126 73.0
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.3e-48 197.2 116 78.4
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.3e-48 197.2 152 61.2
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.7e-48 196.8 146 68.5
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.7e-48 196.8 115 80.0
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.7e-48 196.8 118 76.3
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 2.2e-48 196.4 124 73.4
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 2.2e-48 196.4 116 79.3
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 2.2e-48 196.4 163 63.8
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 2.8e-48 196.1 116 76.7
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 3.7e-48 195.7 153 63.4
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 3.7e-48 195.7 116 74.1
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 3.7e-48 195.7 116 74.1
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 4.9e-48 195.3 146 65.1
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 8.3e-48 194.5 150 65.3
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.1e-47 194.1 116 76.7
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.1e-47 194.1 156 63.5
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.1e-47 194.1 115 73.9
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.4e-47 193.7 118 76.3
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.4e-47 193.7 152 64.5
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.4e-47 193.7 118 75.4
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.8e-47 193.4 122 73.8
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 2.4e-47 193.0 116 76.7
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 3.1e-47 192.6 171 59.6
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 3.1e-47 192.6 116 75.9
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 3.1e-47 192.6 116 77.6
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 4.1e-47 192.2 116 77.6
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 4.1e-47 192.2 159 63.5
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 5.4e-47 191.8 116 75.0
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 7.0e-47 191.4 116 75.0
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 9.2e-47 191.0 203 52.7
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.6e-46 190.3 198 53.5
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.7e-46 189.5 146 65.1
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 2.7e-46 189.5 116 74.1
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 7.7e-46 188.0 186 54.8
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 7.7e-46 188.0 149 66.4
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.7e-45 186.8 125 69.6
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.3e-45 186.4 116 75.0
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 5.0e-45 185.3 148 60.8
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.1e-44 184.1 116 74.1
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.5e-44 183.0 126 69.8
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 5.6e-44 181.8 174 55.7
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.6e-43 180.3 100 83.0
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.1e-43 179.9 108 78.7
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 3.6e-43 179.1 101 81.2
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 4.7e-43 178.7 178 51.7
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.4e-42 177.2 99 80.8
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 2.3e-42 176.4 98 84.7
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 3.0e-42 176.0 204 51.0
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 5.2e-42 175.3 132 62.9
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 6.8e-42 174.9 147 55.1
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.6e-41 172.9 119 70.6
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 4.4e-41 172.2 158 55.7
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 4.4e-41 172.2 104 76.9
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 2.9e-40 169.5 232 45.3
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 6.4e-40 168.3 164 53.7
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 5.9e-38 161.8 162 53.1
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 4.3e-36 155.6 147 54.4
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 8.9e-34 147.9 86 80.2
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.0e-33 146.7 83 77.1
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.7e-32 143.7 86 79.1
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 4.9e-32 142.1 158 50.0
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.1e-31 141.0 138 54.3
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.1e-31 139.0 105 63.8
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 5.4e-31 138.7 121 49.6
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 8.6e-29 131.3 110 54.5
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 6.2e-27 125.2 122 56.6
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.8e-26 123.6 70 82.9
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 6.8e-26 121.7 88 70.5
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 2.6e-25 119.8 116 44.8
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 2.6e-25 119.8 86 64.0
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 5.8e-25 118.6 113 45.1
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 9.8e-25 117.9 114 56.1
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 2.2e-24 116.7 99 52.5
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.1e-23 114.4 111 55.0
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.1e-22 110.2 56 83.9
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 1.3e-21 107.5 88 60.2
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 8.6e-21 104.8 83 62.7
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 5.2e-18 95.5 65 69.2
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 6.8e-18 95.1 115 42.6
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.3e-16 90.9 59 69.5
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.1e-15 87.8 119 39.5
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.9e-15 87.0 53 71.7
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.6e-14 84.0 96 46.9
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 2.1e-14 83.6 48 72.9
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 7.8e-14 81.6 48 70.8
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.3e-13 80.1 114 39.5
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 4.7e-11 72.4 46 80.4
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.8e-10 70.5 50 68.0
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 3.4e-09 66.2 37 75.7
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 8.4e-08 61.6 74 43.2
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.1e-07 61.2 38 78.9
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 1.9e-07 60.5 74 41.9
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 1.2e-06 57.8 38 71.1


User provided reference genes

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