Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 3.8e-154 548.1 277 100.0
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 3.9e-106 388.7 281 70.8
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 9.9e-102 374.0 275 68.4
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.9e-97 359.8 249 72.7
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 7.3e-97 357.8 272 66.2
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 1.6e-96 356.7 276 67.8
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.8e-96 355.9 270 68.1
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 6.8e-95 351.3 275 65.1
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 4.4e-94 348.6 250 70.0
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.3e-93 347.1 273 64.8
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.7e-93 346.7 233 72.1
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 4.9e-93 345.1 275 65.5
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 4.9e-93 345.1 253 67.6
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 4.9e-93 345.1 253 67.6
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 8.4e-93 344.4 251 67.3
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 8.4e-93 344.4 272 65.1
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.1e-92 344.0 274 64.6
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 7.1e-92 341.3 237 71.7
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.2e-91 340.5 275 63.6
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 3.5e-91 339.0 242 69.8
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 7.8e-91 337.8 242 69.4
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 7.8e-91 337.8 236 69.1
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 1.3e-90 337.0 258 66.3
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.7e-90 336.7 268 63.1
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 3.9e-90 335.5 240 67.9
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 3.9e-90 335.5 255 65.9
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 5.1e-90 335.1 279 63.1
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 5.1e-90 335.1 242 69.4
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 6.6e-90 334.7 276 62.3
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.1e-89 334.0 270 63.7
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 1.9e-89 333.2 241 69.7
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 5.6e-89 331.6 278 61.5
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.6e-89 331.6 260 65.0
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 2.1e-88 329.7 260 64.6
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.4e-87 327.0 274 61.3
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 2.4e-87 326.2 236 65.7
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 5.3e-87 325.1 239 67.8
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 5.3e-87 325.1 274 59.9
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 6.9e-87 324.7 277 59.9
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 6.9e-87 324.7 273 60.4
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 9.0e-87 324.3 235 68.1
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 2.6e-86 322.8 281 60.9
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.7e-85 320.1 281 58.7
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 2.2e-85 319.7 259 64.5
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 8.4e-85 317.8 281 57.7
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 1.9e-84 316.6 230 67.0
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 7.1e-84 314.7 251 62.9
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 2.7e-83 312.8 273 59.3
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 6.6e-82 308.1 236 65.3
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 8.7e-82 307.8 277 58.1
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 1.5e-81 307.0 276 56.5
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 1.5e-81 307.0 270 57.4
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.5e-81 307.0 237 63.3
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 2.5e-81 306.2 279 57.7
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 3.3e-81 305.8 237 65.8
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 3.3e-81 305.8 276 56.9
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 4.3e-81 305.4 231 64.9
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 1.3e-80 303.9 272 57.0
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 2.8e-80 302.8 275 57.1
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 2.8e-80 302.8 277 56.3
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 4.8e-80 302.0 248 58.5
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 6.2e-80 301.6 274 56.9
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 1.1e-79 300.8 248 58.5
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.4e-79 300.4 248 59.3
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 2.4e-79 299.7 248 59.3
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.4e-79 299.7 278 57.9
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 5.3e-79 298.5 248 58.5
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 6.9e-79 298.1 241 60.2
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.6e-78 296.2 278 56.8
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.3e-77 293.9 235 62.1
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 3.8e-77 292.4 233 60.5
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 3.8e-77 292.4 233 60.5
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 2.4e-76 289.7 248 56.9
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 3.2e-76 289.3 248 57.3
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 5.5e-76 288.5 256 57.4
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 7.1e-76 288.1 224 63.4
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 7.1e-76 288.1 206 68.9
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 2.1e-75 286.6 248 56.5
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 6.0e-75 285.0 248 56.9
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-74 283.9 236 63.1
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 3.9e-74 282.3 259 55.2
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 6.7e-74 281.6 277 54.9
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 9.6e-73 277.7 246 58.1
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 3.1e-71 272.7 198 69.2
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 1.5e-70 270.4 198 69.2
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 1.0e-69 267.7 244 57.0
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 3.8e-69 265.8 277 54.5
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 6.5e-69 265.0 264 54.9
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 1.4e-68 263.8 186 69.9
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.2e-67 260.8 284 50.4
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 4.6e-67 258.8 224 58.0
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 3.9e-66 255.8 242 54.5
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.1e-65 254.2 227 58.1
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 1.5e-65 253.8 268 50.0
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 2.5e-65 253.1 250 53.6
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 4.8e-64 248.8 195 64.1
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 1.1e-63 247.7 219 58.0
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.2e-60 236.1 186 64.0
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 9.3e-60 234.6 221 55.2
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.6e-59 232.6 181 65.2
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 3.2e-52 209.5 160 66.2
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.7e-50 201.8 220 52.3
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.4e-47 194.1 124 76.6
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-45 186.4 233 48.9
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-42 177.2 164 56.7
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 1.8e-42 177.2 122 69.7
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 6.7e-42 175.3 193 47.7
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 2.9e-37 159.8 218 40.4
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.0e-35 151.8 137 56.2
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 1.1e-31 141.4 153 47.7
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 7.0e-31 138.7 124 55.6
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-30 137.5 243 39.1
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.7e-29 134.0 87 74.7
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.2e-28 129.8 114 57.9
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-25 121.3 103 57.3
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.0e-21 105.9 110 50.9
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-20 104.0 121 48.8
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.0e-18 98.2 74 63.5
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-18 97.4 137 42.3
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.8e-18 95.1 70 70.0
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.7e-17 92.4 99 51.5
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-16 90.5 88 53.4
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 6.3e-16 89.0 96 50.0
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 8.3e-16 88.6 82 51.2
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 5.4e-15 85.9 98 44.9
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 2.7e-14 83.6 91 45.1
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-13 80.1 76 55.3
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.5e-12 77.8 71 52.1
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.1e-11 72.4 142 33.8
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.5e-09 67.8 58 55.2
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 5.7e-09 65.9 167 30.5
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 8.3e-08 62.0 47 55.3
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 8.3e-08 62.0 47 55.3
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-06 58.2 48 58.3
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 1.6e-06 57.8 53 47.2
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 1.6e-06 57.8 53 47.2


User provided reference genes

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