Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 7.5e-58 226.9 107 100.0
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 84.1
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 2.7e-47 191.8 98 88.8
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 2.7e-47 191.8 107 81.3
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 6.0e-47 190.7 107 80.4
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.3e-46 189.5 98 87.8
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 1.3e-46 189.5 107 81.3
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 5.1e-46 187.6 105 81.0
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 79.4
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 80.4
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 77.6
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 79.4
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 80.4
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 79.4
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 78.5
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 1.5e-45 186.0 105 82.9
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 1.9e-45 185.7 107 78.5
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 1.9e-45 185.7 107 79.4
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.9e-45 185.7 106 81.1
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.9e-45 185.7 107 78.5
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 1.9e-45 185.7 107 78.5
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 79.4
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 78.5
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 80.4
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 80.4
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 5.6e-45 184.1 98 84.7
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 5.6e-45 184.1 105 78.1
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 7.3e-45 183.7 107 78.5
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 7.3e-45 183.7 107 78.5
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 1.2e-44 183.0 105 79.0
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 1.2e-44 183.0 105 79.0
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.6e-44 182.6 107 78.5
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.6e-44 182.6 107 78.5
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.6e-44 182.6 107 78.5
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.6e-44 182.6 107 76.6
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 77.6
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 76.6
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 77.6
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 77.6
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 77.6
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 78.5
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 3.6e-44 181.4 105 79.0
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 3.6e-44 181.4 104 76.9
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 3.6e-44 181.4 105 79.0
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 4.7e-44 181.0 105 80.0
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 4.7e-44 181.0 106 76.4
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 78.5
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 78.5
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 78.5
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 78.5
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 78.5
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 78.5
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 78.5
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 78.5
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 78.5
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 8.1e-44 180.3 107 75.7
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.1e-43 179.9 107 77.6
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.1e-43 179.9 107 77.6
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 1.1e-43 179.9 107 77.6
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 79.0
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 78.1
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.1e-43 179.9 106 78.3
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 1.4e-43 179.5 107 76.6
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 1.4e-43 179.5 107 76.6
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 1.4e-43 179.5 106 79.2
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.4e-43 179.5 104 76.9
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 1.8e-43 179.1 107 77.6
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.8e-43 179.1 106 75.5
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.8e-43 179.1 107 75.7
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.8e-43 179.1 107 77.6
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 1.8e-43 179.1 107 74.8
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 2.4e-43 178.7 107 76.6
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 2.4e-43 178.7 107 74.8
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 3.1e-43 178.3 107 76.6
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 3.1e-43 178.3 107 76.6
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 3.1e-43 178.3 105 77.1
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 3.1e-43 178.3 105 79.0
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 3.1e-43 178.3 107 76.6
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 4.0e-43 177.9 104 78.8
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 4.0e-43 177.9 107 76.6
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 4.0e-43 177.9 103 79.6
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 4.0e-43 177.9 105 77.1
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 5.2e-43 177.6 107 76.6
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 5.2e-43 177.6 107 76.6
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 5.2e-43 177.6 105 77.1
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 5.2e-43 177.6 104 76.0
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 6.8e-43 177.2 103 79.6
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 8.9e-43 176.8 107 73.8
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 8.9e-43 176.8 107 73.8
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.2e-42 176.4 105 77.1
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 1.5e-42 176.0 107 76.6
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 1.5e-42 176.0 104 76.0
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 2.0e-42 175.6 107 72.9
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 2.0e-42 175.6 104 75.0
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 2.0e-42 175.6 104 75.0
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 2.0e-42 175.6 104 75.0
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 2.0e-42 175.6 104 75.0
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 2.6e-42 175.3 107 70.1
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.4e-42 174.9 104 74.0
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 3.4e-42 174.9 105 75.2
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 3.4e-42 174.9 105 77.1
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 3.4e-42 174.9 109 72.5
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 4.4e-42 174.5 106 75.5
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 4.4e-42 174.5 103 75.7
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 5.8e-42 174.1 105 76.2
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 73.3
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.7e-41 172.6 105 74.3
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 74.0
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 2.9e-41 171.8 105 76.2
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 2.9e-41 171.8 102 78.4
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 2.9e-41 171.8 102 78.4
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.9e-41 171.8 105 73.3
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.8e-41 171.4 107 71.0
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 4.9e-41 171.0 101 74.3
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 4.9e-41 171.0 105 75.2
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 6.4e-41 170.6 105 74.3
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 6.4e-41 170.6 101 75.2
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 8.4e-41 170.2 95 77.9
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.1e-40 169.9 105 72.4
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.4e-40 168.7 107 71.0
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 2.4e-40 168.7 107 72.0
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.2e-40 168.3 110 71.8
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.2e-40 168.3 107 73.8
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 4.1e-40 167.9 107 71.0
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 4.1e-40 167.9 108 71.3
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 7.1e-40 167.2 107 70.1
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 7.1e-40 167.2 107 70.1
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 7.1e-40 167.2 101 73.3
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 9.2e-40 166.8 107 72.0
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 1.2e-39 166.4 107 69.2
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.6e-39 166.0 105 69.5
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 2.7e-39 165.2 96 72.9
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.5e-39 164.9 107 69.2
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.5e-39 164.9 107 69.2
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 4.6e-39 164.5 105 69.5
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 7.8e-39 163.7 100 71.0
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 2.3e-38 162.2 105 67.6
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.0e-38 161.8 107 68.2
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 3.9e-38 161.4 100 72.0
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 6.6e-38 160.6 107 66.4
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 6.6e-38 160.6 87 78.2
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 8.6e-38 160.2 89 78.7
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 8.6e-38 160.2 101 69.3
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 1.5e-37 159.5 104 72.1
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 2.5e-37 158.7 104 71.2
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 6.2e-36 154.1 169 49.1
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 2.4e-32 142.1 87 75.9
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.4e-32 142.1 104 65.4
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 7.1e-32 140.6 102 59.8
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 9.3e-32 140.2 76 77.6
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.7e-31 138.7 94 64.9
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.5e-31 138.3 100 62.0
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 4.6e-31 137.9 99 64.6
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 3.3e-29 131.7 72 76.4
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 4.8e-28 127.9 65 83.1
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 6.2e-28 127.5 78 73.1
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 2.6e-26 122.1 82 65.9
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 2.9e-25 118.6 95 50.5
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.8e-22 109.4 73 68.5
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 4.3e-21 104.8 92 48.9
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 1.6e-20 102.8 67 70.1
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 2.8e-20 102.1 63 76.2
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 2.8e-20 102.1 63 73.0
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 6.2e-20 100.9 71 63.4
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.4e-19 99.8 54 85.2
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 9.0e-19 97.1 96 45.8
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 3.4e-18 95.1 93 54.8
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 4.5e-18 94.7 57 80.7
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 9.9e-18 93.6 59 74.6
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 1.3e-17 93.2 60 73.3
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 1.3e-17 93.2 63 69.8
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 4.9e-17 91.3 55 70.9
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.1e-16 90.1 55 76.4
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 3.5e-15 85.1 54 66.7
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 1.0e-14 83.6 55 70.9
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 1.8e-14 82.8 45 75.6
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 3.0e-14 82.0 45 77.8
Cfa025682 Carpinus fangiana HOM05D004069 ORTHO05D122540 1.3e-06 56.6 85 34.1


User provided reference genes

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