Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 0.0e+00 2260.7 1163 100.0
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 0.0e+00 1281.9 1146 61.6
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 0.0e+00 1257.7 1144 60.8
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1090.1 1155 52.6
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 7.4e-308 1060.8 1153 51.8
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 3.4e-305 1052.0 1138 53.1
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 8.4e-304 1047.3 1154 50.5
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 3.9e-301 1038.5 1032 56.2
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 9.0e-298 1027.3 1157 49.5
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 4.9e-296 1021.5 1147 49.3
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.9e-296 1021.5 1151 49.8
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 3.2e-295 1018.8 1166 49.0
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 1.3e-293 1013.4 1150 49.2
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 1.8e-293 1013.1 1161 49.2
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 1.6e-291 1006.5 1155 47.9
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 1.3e-288 996.9 1163 48.2
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 2.0e-281 973.0 1151 48.7
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 4.5e-281 971.8 1226 46.5
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 7.7e-281 971.1 1143 48.6
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 1.9e-279 966.5 1151 47.1
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 7.2e-279 964.5 1150 48.0
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 3.9e-277 958.7 1154 47.0
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.1e-276 957.2 1158 47.1
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 3.7e-275 952.2 1151 46.9
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 1.1e-274 950.7 1151 46.4
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 5.9e-273 944.9 1151 46.7
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 1.9e-271 939.9 1139 47.1
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 3.2e-271 939.1 1154 47.0
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 5.5e-271 938.3 1148 46.0
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 1.6e-270 936.8 1158 47.2
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 3.9e-269 932.2 1146 45.4
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 5.2e-269 931.8 1153 46.4
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 9.7e-268 927.5 1148 45.7
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 2.2e-267 926.4 1153 45.5
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 2.8e-267 926.0 1147 44.9
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 8.2e-267 924.5 1153 44.7
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.5e-263 912.9 1150 44.9
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 2.3e-261 906.4 1147 45.1
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 4.4e-260 902.1 1153 44.8
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 2.8e-259 899.4 1146 45.6
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 4.1e-258 895.6 1150 44.4
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 5.3e-258 895.2 1148 45.1
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 7.0e-258 894.8 1150 44.4
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 1.8e-253 880.2 1147 44.1
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 4.0e-253 879.0 1151 44.2
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.0e-253 879.0 1138 43.6
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 2.6e-252 876.3 1142 45.6
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 9.8e-252 874.4 1147 44.6
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 1.3e-251 874.0 1147 44.8
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 1.4e-250 870.5 1145 44.7
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 5.4e-250 868.6 1152 44.1
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 2.0e-249 866.7 1250 42.3
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 7.7e-249 864.8 1094 45.4
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 1.3e-248 864.0 1144 44.0
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 9.5e-247 857.8 1147 43.5
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 3.3e-239 832.8 1132 42.7
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 7.3e-239 831.6 1147 43.1
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.2e-238 830.9 984 47.8
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 1.0e-237 827.8 1148 43.2
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.0e-237 827.8 1158 43.9
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 1.5e-236 823.9 1148 42.2
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 3.4e-236 822.8 1137 42.6
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 4.1e-234 815.8 1163 41.2
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 7.0e-234 815.1 1092 44.1
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 9.2e-234 814.7 1069 43.5
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 1.7e-232 810.4 1159 41.2
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 9.5e-231 804.7 1087 43.5
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 1.8e-229 800.4 1147 42.1
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 7.5e-228 795.0 1139 41.4
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 4.9e-227 792.3 1138 41.4
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 2.4e-226 790.0 1153 40.2
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 4.1e-226 789.3 1138 41.2
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 7.0e-226 788.5 1144 41.5
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 2.1e-225 786.9 1150 40.4
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 2.1e-225 786.9 1147 40.8
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 2.7e-225 786.6 1150 40.1
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 2.7e-225 786.6 1145 40.7
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.0e-224 784.6 1148 40.3
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 3.9e-224 782.7 1146 40.9
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 1.5e-223 780.8 1147 40.6
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 5.6e-223 778.9 1153 41.8
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.2e-222 777.7 1148 39.9
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.5e-217 759.6 1065 42.0
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.7e-216 757.3 1138 40.9
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 4.3e-215 752.7 1147 39.7
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 8.4e-211 738.4 1163 38.5
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.0e-208 731.5 1158 39.4
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 2.2e-203 713.8 1060 42.2
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.8e-197 694.1 997 41.7
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 7.6e-196 688.7 978 41.6
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 9.9e-196 688.3 1134 38.8
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.1e-194 684.9 1151 37.2
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.1e-192 676.0 902 42.0
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 1.4e-189 667.9 956 42.3
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 6.1e-145 519.6 1029 35.5
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 4.7e-121 440.3 1169 29.9
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 3.2e-117 427.6 1178 28.8
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.4e-109 402.1 585 39.7
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.3e-107 395.6 488 47.1
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 7.3e-106 389.8 435 49.9
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.7e-100 371.3 336 57.1
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 3.3e-98 364.4 1157 28.6
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.5e-95 355.5 551 37.4
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 3.1e-88 331.3 538 37.9
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.9e-85 322.0 479 40.1
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.9e-85 322.0 465 41.3
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 4.8e-81 307.4 571 34.9
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 5.8e-63 247.3 180 67.2
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 2.1e-60 238.8 1298 24.5
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 1.8e-59 235.7 154 70.1
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 5.1e-59 234.2 169 63.9
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.3e-57 227.3 237 51.9
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 7.4e-50 203.8 325 39.1
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 9.1e-48 196.8 188 51.6
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 4.8e-41 174.5 255 42.0
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 1.1e-40 173.3 181 58.6
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.8e-40 172.6 224 46.4
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.5e-37 162.2 208 43.8
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 7.2e-37 160.6 222 41.0
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 7.4e-34 150.6 250 40.0
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.8e-27 129.4 134 46.3
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 3.7e-25 121.7 117 50.4
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.8e-24 119.4 118 48.3
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 8.5e-22 110.5 171 39.2
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 8.5e-22 110.5 284 30.6
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 1.4e-19 103.2 122 44.3
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 6.8e-19 100.9 126 44.4
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 6.8e-19 100.9 126 44.4
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.6e-18 99.0 235 31.9
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 4.4e-18 98.2 131 42.0
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 8.3e-17 94.0 1279 20.1
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.1e-16 93.6 72 63.9
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 1.1e-16 93.6 63 57.1
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 1.2e-15 90.1 140 37.9
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 3.8e-14 85.1 54 74.1
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 8.6e-14 84.0 59 62.7
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 1.9e-13 82.8 90 44.4
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 2.5e-13 82.4 162 32.7
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.6e-13 81.3 55 65.5
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 3.6e-12 78.6 77 46.8
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.4e-10 72.0 90 43.3
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 9.8e-10 70.5 76 50.0
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 4.6e-07 61.6 51 54.9
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 6.6e-06 57.8 111 34.2


User provided reference genes

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