Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 0.0e+00 1314.3 685 100.0
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.2e-254 883.2 650 71.4
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 5.8e-252 874.4 641 71.6
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.9e-247 859.4 641 69.6
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 5.6e-239 831.2 642 68.4
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 3.7e-235 818.5 646 66.9
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 1.9e-234 816.2 641 69.1
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 6.0e-233 811.2 642 67.1
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 6.6e-232 807.7 641 68.5
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.1e-231 807.0 646 65.8
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 2.1e-230 802.7 650 65.2
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 5.2e-229 798.1 645 65.7
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 8.4e-227 790.8 647 63.8
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.0e-224 782.3 608 66.6
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.5e-223 780.0 656 61.9
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.9e-223 779.6 654 60.6
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 1.2e-222 776.9 666 61.9
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 4.0e-221 771.9 641 62.4
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 1.2e-220 770.4 641 62.4
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.5e-220 770.0 638 62.9
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.7e-219 766.5 646 62.1
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 3.8e-219 765.4 641 62.6
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 4.9e-219 765.0 644 61.6
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.9e-218 763.1 689 59.7
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 5.4e-218 761.5 633 62.6
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 1.2e-217 760.4 654 61.0
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 1.3e-216 756.9 638 61.4
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 8.7e-216 754.2 637 61.5
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.9e-215 753.1 650 60.2
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 2.5e-215 752.7 677 59.4
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 4.3e-215 751.9 640 61.9
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 5.6e-215 751.5 637 61.7
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 7.3e-215 751.1 645 63.4
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 9.6e-215 750.7 643 62.5
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.3e-214 750.4 638 61.6
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 3.6e-214 748.8 651 61.3
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 4.8e-214 748.4 633 61.9
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 4.8e-214 748.4 640 61.6
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 4.8e-214 748.4 643 61.0
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 6.2e-214 748.0 651 61.3
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 6.9e-213 744.6 653 61.3
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.5e-212 743.4 633 61.5
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 5.8e-212 741.5 642 60.6
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 1.3e-211 740.3 641 61.0
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.2e-211 739.6 648 61.4
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.2e-211 739.6 644 60.6
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 2.9e-211 739.2 639 60.3
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 3.8e-211 738.8 635 60.6
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 3.8e-211 738.8 635 60.8
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.4e-210 736.9 659 59.0
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 2.4e-210 736.1 651 60.8
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.2e-210 735.7 635 61.1
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 3.2e-210 735.7 654 59.2
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-209 733.8 638 60.8
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 3.5e-209 732.3 655 59.8
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 6.7e-208 728.0 650 59.2
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 8.7e-208 727.6 638 59.1
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.9e-207 726.5 641 59.8
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 2.5e-207 726.1 653 59.7
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.1e-206 723.0 638 59.2
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 2.1e-206 723.0 638 59.2
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.8e-206 722.6 530 70.0
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 8.1e-206 721.1 656 59.1
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 1.1e-205 720.7 643 58.6
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 5.3e-205 718.4 647 60.0
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.2e-204 717.2 643 58.8
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 2.0e-204 716.5 654 58.3
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.3e-203 713.8 644 57.6
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 4.9e-203 711.8 667 56.2
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 1.6e-201 706.8 697 55.2
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-199 700.7 640 58.6
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.5e-199 699.5 663 56.9
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 7.4e-199 698.0 640 58.3
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 6.2e-198 694.9 644 56.1
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 1.4e-197 693.7 648 59.3
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 5.3e-197 691.8 640 57.3
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 3.8e-195 685.6 643 57.1
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 4.9e-195 685.3 641 54.8
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.1e-194 684.1 634 56.2
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 2.5e-194 682.9 634 55.5
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 2.5e-194 682.9 634 56.3
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 4.2e-194 682.2 633 56.6
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 7.1e-194 681.4 633 56.6
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 4.6e-193 678.7 569 60.8
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 4.6e-193 678.7 633 55.6
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 1.0e-192 677.6 635 55.1
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 2.3e-192 676.4 634 55.8
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 2.3e-192 676.4 556 64.9
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 3.9e-192 675.6 635 55.7
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 3.9e-192 675.6 635 55.7
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 3.9e-192 675.6 635 55.7
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 5.1e-192 675.2 625 57.8
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 6.7e-192 674.9 654 56.0
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.3e-191 672.2 652 54.8
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 2.8e-190 669.5 657 54.2
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.4e-189 667.2 659 54.2
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.5e-188 663.7 528 64.2
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 5.0e-187 658.7 530 63.4
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 4.2e-186 655.6 635 53.9
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 9.4e-186 654.4 577 62.0
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.2e-177 627.5 629 56.0
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 4.7e-177 625.5 558 60.8
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 1.0e-171 607.8 644 52.5
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 3.6e-169 599.4 499 62.5
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.4e-165 587.4 617 52.4
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 1.9e-162 577.0 517 57.3
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 2.7e-161 573.2 644 52.3
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.0e-159 567.0 656 48.9
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 2.8e-158 563.1 645 48.4
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 8.3e-158 561.6 646 47.7
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 6.1e-145 518.8 394 66.8
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 2.7e-140 503.4 641 42.3
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 5.6e-138 495.7 616 46.6
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 6.1e-137 492.3 638 45.6
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.1e-133 481.5 399 66.7
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.7e-131 474.2 638 42.9
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 3.0e-131 473.4 638 43.1
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 8.9e-128 461.8 422 58.3
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 7.5e-127 458.8 637 40.0
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 2.8e-121 440.3 385 58.4
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 3.7e-81 307.0 441 42.2
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 9.0e-80 302.4 233 64.4
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 1.1e-74 285.4 302 52.3
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 2.5e-74 284.3 370 44.9
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 5.0e-70 270.0 311 49.8
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 9.7e-66 255.8 206 65.5
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.2e-63 248.8 436 38.3
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 9.7e-58 229.2 383 39.4
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 3.0e-51 207.6 374 38.5
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 8.8e-51 206.1 252 46.4
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 7.0e-48 196.4 195 56.4
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 2.6e-42 177.9 306 39.5
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.4e-40 171.4 237 48.9
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 5.4e-40 170.2 206 47.6
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-39 168.7 139 60.4
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 2.2e-38 164.9 257 40.5
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 2.5e-37 161.4 160 50.6
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 4.4e-26 124.0 188 41.5
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 5.7e-26 123.6 243 35.4
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 1.7e-25 122.1 623 24.1
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 2.2e-25 121.7 92 58.7
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 3.2e-24 117.9 96 58.3
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 3.5e-23 114.4 115 57.4
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 4.6e-23 114.0 92 59.8
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-20 105.9 132 47.0
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.2e-20 103.6 132 46.2
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.0e-20 103.2 134 45.5
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 2.0e-18 98.6 74 63.5
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 9.8e-18 96.3 78 59.0
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.7e-17 95.5 141 42.6
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 6.4e-17 93.6 78 59.0
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.6e-14 83.6 69 58.0
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.5e-13 82.4 67 58.2
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 2.6e-10 71.6 54 59.3
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 3.4e-10 71.2 64 53.1
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 2.9e-09 68.2 63 66.7
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-08 65.9 46 67.4
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 4.1e-08 64.3 76 46.1
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 5.4e-08 63.9 58 48.3
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 6.0e-07 60.5 302 25.5


User provided reference genes

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