Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 4.4e-251 870.9 475 100.0
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 7.5e-150 534.6 497 63.2
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.2e-149 533.1 485 59.8
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 7.3e-145 518.1 487 63.2
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.0e-143 514.2 509 61.9
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 5.2e-143 511.9 474 59.5
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 1.2e-136 490.7 253 87.0
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 8.0e-136 488.0 258 83.3
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 5.2e-135 485.3 257 83.3
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 8.9e-135 484.6 255 84.7
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 2.0e-134 483.4 254 83.9
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 2.6e-134 483.0 257 82.9
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 5.8e-134 481.9 254 83.5
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 5.8e-134 481.9 254 83.5
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.7e-133 480.3 256 82.0
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 4.9e-133 478.8 402 62.4
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 1.1e-132 477.6 253 83.8
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 1.4e-132 477.2 255 82.4
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.9e-132 476.9 258 81.4
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.9e-132 476.9 258 82.2
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.4e-132 476.5 258 81.8
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 3.2e-132 476.1 253 83.4
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 5.4e-132 475.3 252 83.3
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 9.2e-132 474.6 255 82.7
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.0e-131 473.4 255 83.1
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 3.5e-131 472.6 255 82.4
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 6.0e-131 471.9 254 81.9
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 1.7e-130 470.3 252 83.7
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 2.3e-130 469.9 255 81.6
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 2.3e-130 469.9 254 81.5
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 2.3e-130 469.9 254 81.9
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 3.0e-130 469.5 256 81.6
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 3.9e-130 469.2 255 82.0
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 5.0e-130 468.8 254 82.7
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 5.0e-130 468.8 360 68.3
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 6.6e-130 468.4 253 81.8
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.5e-129 467.2 255 81.6
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 1.5e-129 467.2 277 79.8
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 1.5e-129 467.2 255 81.6
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.9e-129 466.8 277 80.1
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 9.5e-129 464.5 255 82.0
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 2.8e-128 463.0 369 62.3
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 3.6e-128 462.6 252 81.7
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 3.6e-128 462.6 376 66.5
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 4.7e-128 462.2 308 69.5
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 6.2e-128 461.8 277 75.8
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 8.1e-128 461.5 254 79.1
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.1e-127 461.1 253 81.8
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.3e-127 459.9 254 82.3
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 4.0e-127 459.1 443 59.8
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 6.8e-127 458.4 253 79.1
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 8.9e-127 458.0 252 81.3
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 8.9e-127 458.0 255 80.0
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 8.9e-127 458.0 378 61.1
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.2e-126 457.6 280 75.7
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 1.5e-126 457.2 254 78.7
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 5.8e-126 455.3 252 79.8
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 9.9e-126 454.5 379 65.4
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 1.3e-125 454.1 253 79.8
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.7e-125 453.8 259 76.8
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 2.2e-125 453.4 252 79.8
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 3.7e-125 452.6 458 55.0
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 6.4e-125 451.8 277 74.0
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 6.4e-125 451.8 277 75.1
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 1.9e-124 450.3 254 79.1
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 3.2e-124 449.5 252 78.6
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 4.1e-124 449.1 365 64.4
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 5.4e-124 448.7 370 63.5
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 7.1e-124 448.4 252 79.4
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 1.6e-123 447.2 335 65.1
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 2.1e-123 446.8 252 78.2
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 4.6e-123 445.7 254 77.2
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 6.0e-123 445.3 254 77.2
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.8e-123 444.9 254 76.8
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 7.8e-123 444.9 489 51.3
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 1.7e-122 443.7 256 78.1
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 3.0e-122 443.0 248 78.6
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 3.9e-122 442.6 253 77.1
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 8.6e-122 441.4 252 77.4
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 1.5e-121 440.7 252 77.0
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 1.5e-121 440.7 233 83.3
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 1.9e-121 440.3 255 77.3
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 2.5e-121 439.9 253 77.5
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 3.3e-121 439.5 254 77.2
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 7.3e-121 438.3 252 76.6
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 9.5e-121 438.0 254 75.6
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 1.2e-120 437.6 484 54.1
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 1.6e-120 437.2 257 76.3
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 2.1e-120 436.8 253 79.1
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 4.7e-120 435.6 254 76.4
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 4.7e-120 435.6 355 60.3
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 8.1e-120 434.9 255 74.9
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 1.8e-119 433.7 233 81.5
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 2.4e-119 433.3 504 50.4
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 8.9e-119 431.4 334 63.2
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 8.9e-119 431.4 257 75.1
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 8.9e-119 431.4 384 59.6
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 9.9e-118 427.9 253 74.3
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.7e-117 427.2 255 74.5
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.1e-116 424.5 352 62.5
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 1.4e-116 424.1 256 77.0
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 5.4e-116 422.2 254 74.8
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 3.5e-115 419.5 256 76.2
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 6.0e-115 418.7 254 76.4
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 4.7e-112 409.1 256 73.4
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.8e-111 407.1 308 63.3
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 6.9e-111 405.2 452 52.0
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 7.6e-110 401.7 402 52.7
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.1e-108 397.9 256 71.5
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 7.1e-108 395.2 376 54.8
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 4.3e-105 386.0 360 53.6
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 6.2e-104 382.1 300 61.3
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.4e-103 380.2 253 70.4
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 6.9e-103 378.6 202 80.7
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.7e-101 374.0 244 69.7
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.1e-97 361.3 210 74.3
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 6.0e-91 339.0 177 83.6
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 5.1e-90 335.9 250 62.0
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 1.5e-89 334.3 257 58.8
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.3e-89 333.2 249 61.4
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.4e-84 317.8 174 82.8
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 7.1e-84 315.5 252 59.9
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.8e-82 310.8 173 82.1
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.8e-82 310.8 173 82.1
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.0e-82 310.1 358 49.4
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.9e-81 307.4 249 59.4
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.8e-80 303.5 257 63.4
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 3.1e-79 300.1 190 72.1
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 2.6e-78 297.0 173 77.5
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.2e-77 293.9 176 75.6
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.1e-76 291.6 249 60.6
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.9e-76 290.8 173 76.9
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 7.4e-73 278.9 230 59.1
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 1.6e-67 261.2 324 47.5
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 2.1e-67 260.8 263 51.3
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 3.7e-64 250.0 254 50.0
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 9.1e-63 245.4 193 59.1
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.5e-60 237.3 354 40.4
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 8.0e-59 232.3 191 59.7
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 2.2e-53 214.2 175 57.1
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 5.0e-53 213.0 264 51.9
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 2.1e-51 207.6 230 47.8
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.7e-51 207.2 212 60.8
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 4.0e-50 203.4 223 45.7
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 5.3e-47 193.0 196 54.1
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 3.8e-45 186.8 249 42.2
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 5.0e-45 186.4 225 48.9
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 4.2e-44 183.3 176 51.7
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 4.4e-41 173.3 128 62.5
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 7.5e-41 172.6 124 62.1
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 8.0e-35 152.5 84 71.4
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.3e-29 134.4 81 71.6
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 4.1e-15 87.0 52 73.1
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 2.3e-13 81.3 43 74.4
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 2.3e-13 81.3 43 74.4
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 7.1e-07 59.7 166 26.5
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 9.2e-07 59.3 142 28.2


User provided reference genes

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