Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 2.5e-153 545.4 277 100.0
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 3.4e-102 375.6 274 71.5
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 3.5e-99 365.5 275 70.5
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.5e-81 307.0 272 63.6
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 4.8e-80 302.0 267 61.8
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 9.3e-76 287.7 276 56.2
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.2e-75 287.3 274 56.6
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.1e-75 286.6 277 54.5
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 1.3e-74 283.9 277 56.3
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 2.3e-74 283.1 266 56.0
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 3.9e-74 282.3 283 55.1
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 5.1e-74 282.0 275 53.8
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 5.1e-74 282.0 276 54.3
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 6.7e-74 281.6 276 55.4
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 6.7e-74 281.6 280 53.9
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 6.7e-74 281.6 276 54.0
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 8.7e-74 281.2 275 53.8
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 1.1e-73 280.8 271 56.8
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.1e-73 280.8 275 54.5
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 1.5e-73 280.4 276 56.5
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 7.4e-73 278.1 243 62.1
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 3.7e-72 275.8 267 58.1
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 6.2e-72 275.0 228 61.4
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.4e-71 273.9 273 54.2
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 1.8e-71 273.5 272 54.0
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 1.8e-71 273.5 276 54.7
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 4.0e-71 272.3 270 56.7
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 9.0e-71 271.2 270 57.0
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 2.0e-70 270.0 276 53.6
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 2.0e-70 270.0 288 53.5
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 5.8e-70 268.5 246 61.4
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 1.3e-69 267.3 275 55.3
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 1.3e-69 267.3 275 55.3
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.7e-69 266.9 275 57.5
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.2e-69 266.5 243 60.5
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 3.8e-69 265.8 267 53.2
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 8.4e-69 264.6 276 52.9
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 8.4e-69 264.6 278 52.9
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.1e-68 264.2 246 60.6
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.5e-68 263.1 246 60.2
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.5e-68 263.1 275 53.1
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 2.5e-68 263.1 250 55.6
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.2e-67 260.8 247 55.5
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 1.6e-67 260.4 227 58.1
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 2.1e-67 260.0 275 54.2
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.1e-67 260.0 245 55.1
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 3.5e-67 259.2 231 60.2
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 4.6e-67 258.8 276 52.2
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 2.3e-66 256.5 229 59.8
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.3e-66 256.5 280 52.1
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 3.0e-66 256.1 265 57.0
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 8.7e-66 254.6 267 56.2
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.9e-65 253.4 225 57.3
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 5.7e-65 251.9 222 58.6
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 9.6e-65 251.1 272 52.9
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.3e-64 250.8 236 57.2
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 1.6e-64 250.4 261 55.9
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 3.7e-64 249.2 243 54.7
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 6.3e-64 248.4 230 58.3
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.1e-63 247.7 275 51.3
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.1e-63 247.7 275 51.3
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.4e-63 247.3 287 49.5
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 2.4e-63 246.5 253 56.9
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.4e-63 246.5 272 54.8
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.3e-63 245.4 273 54.6
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 5.3e-63 245.4 264 50.4
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 9.0e-63 244.6 275 50.9
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.0e-62 243.4 272 54.0
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.6e-62 243.0 264 50.4
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 1.3e-61 240.7 241 56.8
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.4e-60 237.3 249 54.2
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.4e-60 237.3 249 54.2
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.9e-60 236.9 286 53.1
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 7.2e-60 235.0 311 49.2
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 2.1e-59 233.4 252 57.1
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 2.1e-59 233.4 228 57.0
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 2.7e-59 233.0 254 52.4
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 3.6e-59 232.6 261 51.7
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.0e-58 231.1 273 46.5
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 1.3e-58 230.7 234 56.4
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.3e-58 229.9 252 51.2
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 3.9e-58 229.2 226 55.8
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 5.1e-58 228.8 239 54.4
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.1e-57 227.6 202 58.9
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.5e-57 227.3 279 49.5
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 1.5e-57 227.3 228 59.6
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.9e-57 226.9 250 51.2
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 7.4e-57 224.9 271 53.5
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.6e-56 223.8 286 47.6
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 1.1e-55 221.1 266 50.4
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.4e-55 220.7 271 49.4
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 1.8e-55 220.3 287 48.1
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 4.1e-55 219.2 287 47.7
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 4.1e-55 219.2 253 51.8
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 5.3e-55 218.8 287 48.1
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 5.3e-55 218.8 287 48.1
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 5.3e-55 218.8 246 48.8
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.2e-54 217.6 288 47.6
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 2.0e-54 216.9 233 57.5
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 5.9e-54 215.3 249 53.0
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.0e-53 214.5 244 54.1
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 2.2e-53 213.4 202 55.9
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 5.0e-53 212.2 250 46.8
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.1e-52 211.1 236 51.3
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 1.1e-52 211.1 200 57.0
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 4.6e-51 205.7 200 58.0
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.4e-50 204.1 215 49.8
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.8e-50 203.8 270 50.4
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 5.1e-50 202.2 237 48.9
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 5.1e-50 202.2 255 46.7
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 3.3e-49 199.5 278 44.2
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 3.7e-48 196.1 161 70.2
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.4e-47 194.1 177 59.9
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.8e-47 193.7 168 62.5
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 9.1e-47 191.4 240 49.6
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.2e-46 191.0 246 51.2
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 3.4e-46 189.5 239 49.4
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 3.4e-46 189.5 266 45.9
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 4.5e-46 189.1 257 42.8
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 5.9e-46 188.7 193 50.8
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 2.9e-45 186.4 253 43.9
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 3.8e-45 186.0 280 42.5
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 5.0e-45 185.7 233 49.8
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 6.5e-45 185.3 250 46.4
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 6.5e-45 185.3 249 43.4
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.9e-44 183.7 223 48.4
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 2.5e-44 183.3 254 43.3
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 3.0e-42 176.4 182 51.1
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.0e-41 173.7 202 46.0
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.6e-41 173.3 202 49.5
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 6.3e-40 168.7 217 48.4
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 2.6e-38 163.3 162 48.1
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 7.7e-38 161.8 211 44.1
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.8e-37 159.5 199 47.2
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 1.5e-36 157.5 278 39.2
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 9.4e-36 154.8 163 55.8
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 8.8e-34 148.3 161 52.8
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.5e-33 147.5 121 57.0
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 4.4e-33 146.0 241 39.0
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 1.7e-32 144.1 203 43.8
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.0e-29 134.8 159 49.1
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 2.9e-29 133.3 94 62.8
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 1.1e-28 131.3 162 50.6
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.5e-28 131.0 145 47.6
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 4.2e-28 129.4 171 52.0
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 5.5e-28 129.0 127 52.0
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 4.7e-27 125.9 124 50.8
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 8.0e-27 125.2 163 55.8
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 2.3e-26 123.6 149 51.0
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 5.2e-26 122.5 105 57.1
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 2.0e-25 120.6 165 52.7
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.2e-24 117.1 84 61.9
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 9.1e-23 111.7 97 63.9
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.0e-21 108.2 265 33.2
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 3.8e-21 106.3 245 34.3
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.1e-20 104.8 165 50.9
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 1.5e-20 104.4 170 38.2
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.8e-19 100.1 105 55.2
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.0e-18 98.2 60 68.3
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 7.7e-14 82.0 122 44.3
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 9.5e-12 75.1 153 39.2
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 1.6e-11 74.3 114 36.0
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 3.6e-11 73.2 56 55.4
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 8.0e-11 72.0 97 48.5
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 9.8e-09 65.1 75 46.7
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 1.3e-08 64.7 80 38.8
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 6.4e-08 62.4 76 50.0
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.4e-07 60.5 46 58.7
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 5.4e-07 59.3 65 47.7
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 1.2e-06 58.2 72 37.5
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 5.9e-06 55.8 49 44.9


User provided reference genes

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