Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 5.2e-75 284.6 144 100.0
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.6e-52 209.9 144 75.0
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 6.8e-51 204.5 144 75.0
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 4.4e-50 201.8 144 72.9
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 1.6e-47 193.4 144 70.1
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 2.1e-36 156.4 130 63.1
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 2.1e-36 156.4 140 60.0
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 1.4e-35 153.7 131 59.5
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 2.6e-34 149.4 124 59.7
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 3.4e-34 149.1 118 64.4
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 7.6e-34 147.9 122 62.3
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.3e-33 147.1 143 55.2
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 1.3e-33 147.1 117 61.5
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 1.7e-33 146.7 143 55.2
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 1.7e-33 146.7 143 55.2
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 3.8e-33 145.6 123 61.0
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 4.9e-33 145.2 116 61.2
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 8.4e-33 144.4 133 56.4
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 1.1e-32 144.1 127 58.3
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.4e-32 143.7 127 59.8
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 1.9e-32 143.3 119 58.0
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 3.2e-32 142.5 119 57.1
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 4.1e-32 142.1 116 61.2
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 5.4e-32 141.7 120 60.8
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 7.1e-32 141.4 122 61.5
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 9.2e-32 141.0 140 52.1
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 1.2e-31 140.6 128 56.2
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 2.1e-31 139.8 125 58.4
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 2.1e-31 139.8 121 58.7
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 2.7e-31 139.4 131 55.0
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 3.5e-31 139.0 133 57.1
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 3.5e-31 139.0 121 58.7
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 3.5e-31 139.0 121 58.7
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 4.6e-31 138.7 136 56.6
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 4.6e-31 138.7 135 57.8
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 4.6e-31 138.7 135 57.8
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 6.0e-31 138.3 124 58.9
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 6.0e-31 138.3 144 54.2
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 7.8e-31 137.9 143 55.2
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 1.3e-30 137.1 113 61.1
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 1.7e-30 136.7 144 53.5
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 1.7e-30 136.7 124 55.6
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 1.7e-30 136.7 119 62.2
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 1.7e-30 136.7 143 53.8
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 2.3e-30 136.3 141 53.9
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 3.9e-30 135.6 123 56.9
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 5.1e-30 135.2 135 54.8
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 5.1e-30 135.2 119 56.3
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 5.1e-30 135.2 143 49.7
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 6.6e-30 134.8 127 55.1
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 8.6e-30 134.4 143 55.2
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 8.6e-30 134.4 121 59.5
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 8.6e-30 134.4 145 53.8
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 1.1e-29 134.0 121 57.0
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 1.5e-29 133.7 120 55.8
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.9e-29 133.3 143 53.1
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 2.5e-29 132.9 130 51.5
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 4.3e-29 132.1 120 59.2
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 4.3e-29 132.1 121 56.2
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 5.6e-29 131.7 143 53.8
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 7.3e-29 131.3 121 57.0
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 9.6e-29 131.0 140 52.1
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 9.6e-29 131.0 121 55.4
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 9.6e-29 131.0 141 51.8
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 1.6e-28 130.2 116 58.6
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 1.6e-28 130.2 123 57.7
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 2.8e-28 129.4 124 54.0
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 2.8e-28 129.4 144 48.6
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 3.6e-28 129.0 122 56.6
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 3.6e-28 129.0 106 62.3
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 4.7e-28 128.6 140 51.4
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 4.7e-28 128.6 127 55.1
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.1e-27 127.5 138 49.3
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 1.1e-27 127.5 115 58.3
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 1.1e-27 127.5 135 54.1
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 5.2e-27 125.2 143 52.4
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 5.2e-27 125.2 115 55.7
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 5.2e-27 125.2 132 54.5
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 5.2e-27 125.2 144 52.1
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 6.9e-27 124.8 141 51.1
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.5e-26 123.6 143 47.6
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 1.5e-26 123.6 116 58.6
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.5e-26 123.6 126 55.6
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.0e-26 123.2 122 52.5
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 2.6e-26 122.9 136 51.5
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 4.4e-26 122.1 123 56.1
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.3e-25 120.6 122 51.6
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 1.3e-25 120.6 167 46.1
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.7e-25 120.2 140 50.7
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 2.2e-25 119.8 169 46.2
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 2.9e-25 119.4 134 50.7
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 4.9e-25 118.6 141 48.9
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 4.9e-25 118.6 121 52.9
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 4.9e-25 118.6 121 52.9
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 1.4e-24 117.1 116 55.2
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 4.2e-24 115.5 115 54.8
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 4.2e-24 115.5 116 55.2
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 4.2e-24 115.5 116 54.3
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 5.4e-24 115.2 124 53.2
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 5.4e-24 115.2 130 51.5
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 7.1e-24 114.8 105 58.1
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 7.1e-24 114.8 105 58.1
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 7.1e-24 114.8 105 58.1
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 7.1e-24 114.8 105 58.1
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 7.1e-24 114.8 105 58.1
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 7.1e-24 114.8 105 58.1
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 9.3e-24 114.4 116 54.3
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 9.3e-24 114.4 116 54.3
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 1.2e-23 114.0 116 54.3
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 1.2e-23 114.0 105 58.1
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 2.1e-23 113.2 116 54.3
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 2.7e-23 112.8 97 58.8
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 3.5e-23 112.5 101 58.4
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 4.6e-23 112.1 121 52.9
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 6.0e-23 111.7 117 53.0
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 3.9e-22 109.0 129 49.6
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 5.1e-22 108.6 114 52.6
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 6.6e-22 108.2 123 50.4
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 8.7e-22 107.8 98 62.2
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 3.3e-21 105.9 98 61.2
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 3.3e-21 105.9 133 47.4
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 1.1e-19 100.9 102 52.9
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 5.8e-18 95.1 114 47.4
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 7.6e-18 94.7 78 64.1
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.2e-17 93.2 105 51.4
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 2.4e-16 89.7 142 44.4
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 9.3e-16 87.8 116 47.4
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 1.2e-15 87.4 95 53.7
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.0e-14 84.3 110 46.4
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 2.8e-12 76.3 112 34.8
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 6.2e-12 75.1 107 38.3
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 1.8e-11 73.6 119 47.1
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.6e-10 69.7 98 40.8
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 5.8e-10 68.6 117 34.2
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 9.9e-10 67.8 111 39.6
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 4.9e-09 65.5 142 33.8
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 1.1e-08 64.3 74 52.7
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.2e-07 60.8 68 45.6
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 2.7e-07 59.7 55 58.2
Duzib170G0487 Durio zibethinus HOM05D004872 ORTHO05D006050 2.7e-07 59.7 41 61.0


User provided reference genes

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