Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 3.0e-66 255.0 124 100.0
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 8.2e-40 167.2 125 68.8
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 5.9e-38 161.0 125 66.4
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 4.2e-36 154.8 127 63.0
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.5e-33 146.4 125 62.4
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 1.4e-31 139.8 124 58.1
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.8e-31 139.4 125 60.0
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 5.3e-31 137.9 126 57.9
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 9.1e-31 137.1 120 60.0
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 1.2e-30 136.7 134 54.5
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.6e-30 136.3 121 56.2
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 5.9e-30 134.4 121 56.2
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.3e-29 133.3 126 57.1
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.3e-29 133.3 121 55.4
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 2.9e-29 132.1 124 54.8
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 5.0e-29 131.3 130 55.4
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 8.5e-29 130.6 122 54.1
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 8.5e-29 130.6 128 53.1
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 1.5e-28 129.8 120 60.8
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 1.9e-28 129.4 124 56.5
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 2.5e-28 129.0 119 53.8
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 4.2e-28 128.3 129 53.5
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 5.5e-28 127.9 129 54.3
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 7.2e-28 127.5 121 56.2
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 7.2e-28 127.5 126 51.6
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 9.4e-28 127.1 138 50.0
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 1.2e-27 126.7 129 54.3
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 1.2e-27 126.7 127 51.2
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.2e-27 126.7 121 55.4
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 1.6e-27 126.3 125 55.2
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 1.6e-27 126.3 121 53.7
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.7e-27 125.6 122 54.1
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.7e-27 125.6 128 50.8
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.6e-27 125.2 128 50.8
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 3.6e-27 125.2 124 53.2
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 3.6e-27 125.2 124 52.4
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 4.7e-27 124.8 129 51.2
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 4.7e-27 124.8 133 51.1
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 4.7e-27 124.8 123 54.5
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 6.1e-27 124.4 128 50.8
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 6.1e-27 124.4 127 50.4
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 1.0e-26 123.6 132 50.0
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 1.0e-26 123.6 121 56.2
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 1.4e-26 123.2 127 51.2
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 1.8e-26 122.9 129 51.2
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 1.8e-26 122.9 126 52.4
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 4.0e-26 121.7 120 53.3
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 5.2e-26 121.3 128 49.2
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 5.2e-26 121.3 129 52.7
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 6.7e-26 120.9 128 50.0
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 6.7e-26 120.9 128 50.0
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 8.8e-26 120.6 123 51.2
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 8.8e-26 120.6 128 50.8
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 1.1e-25 120.2 126 50.0
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 1.1e-25 120.2 129 50.4
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 1.1e-25 120.2 129 50.4
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 1.5e-25 119.8 127 50.4
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 1.5e-25 119.8 124 52.4
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 2.6e-25 119.0 128 50.0
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 3.3e-25 118.6 122 54.1
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 4.4e-25 118.2 128 50.0
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 4.4e-25 118.2 128 50.0
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 5.7e-25 117.9 128 49.2
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 5.7e-25 117.9 120 51.7
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 7.5e-25 117.5 124 50.8
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 7.5e-25 117.5 128 50.0
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 9.7e-25 117.1 128 49.2
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 9.7e-25 117.1 127 50.4
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 9.7e-25 117.1 85 63.5
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 9.7e-25 117.1 140 46.4
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 9.7e-25 117.1 124 50.0
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 2.2e-24 115.9 124 48.4
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.8e-24 115.5 124 50.8
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 2.8e-24 115.5 141 45.4
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 3.7e-24 115.2 132 52.3
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 3.7e-24 115.2 132 50.8
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 4.8e-24 114.8 126 50.8
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 4.8e-24 114.8 124 50.8
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 6.3e-24 114.4 124 50.8
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 1.1e-23 113.6 124 48.4
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.1e-23 113.6 117 51.3
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.8e-23 112.8 133 45.9
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 1.8e-23 112.8 120 50.0
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 2.4e-23 112.5 124 48.4
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 3.1e-23 112.1 115 50.4
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 4.1e-23 111.7 124 50.0
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 9.1e-23 110.5 121 50.4
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 9.1e-23 110.5 124 51.6
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 9.1e-23 110.5 124 46.0
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 9.1e-23 110.5 129 49.6
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.2e-22 110.2 124 49.2
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 1.6e-22 109.8 122 45.1
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.0e-22 109.4 127 48.0
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 3.5e-22 108.6 118 48.3
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 5.9e-22 107.8 124 49.2
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 5.9e-22 107.8 128 47.7
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 7.7e-22 107.5 117 47.0
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 1.3e-21 106.7 118 50.8
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.3e-21 106.7 119 46.2
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 1.3e-21 106.7 123 50.4
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.2e-21 105.9 130 46.9
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 5.0e-21 104.8 115 46.1
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 6.5e-21 104.4 125 50.4
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 6.5e-21 104.4 128 46.1
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 1.1e-20 103.6 129 48.8
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 1.1e-20 103.6 124 48.4
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.9e-20 102.8 124 44.4
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 3.2e-20 102.1 119 49.6
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 4.2e-20 101.7 124 46.8
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 3.6e-19 98.6 125 42.4
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 4.7e-19 98.2 122 47.5
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 1.4e-18 96.7 122 42.6
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 2.3e-18 95.9 130 40.8
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 5.2e-18 94.7 140 39.3
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.0e-17 92.8 121 44.6
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 2.6e-17 92.4 62 62.9
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 2.8e-16 89.0 124 41.1
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 3.7e-16 88.6 128 41.4
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.6e-14 83.2 139 34.5
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 2.7e-14 82.4 132 37.1
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 4.5e-14 81.6 112 40.2
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.3e-13 80.1 59 57.6
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.7e-13 79.7 61 50.8
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 1.7e-13 79.7 111 43.2
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 6.5e-13 77.8 59 52.5
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 8.5e-13 77.4 93 45.2
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 1.5e-12 76.6 72 51.4
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 1.9e-12 76.3 119 37.0
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.5e-12 75.9 61 60.7
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 2.5e-12 75.9 116 37.9
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 5.5e-12 74.7 138 39.1
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.0e-10 68.9 44 65.9
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 2.0e-09 66.2 59 50.8
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 7.5e-09 64.3 111 37.8
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.2e-08 62.8 89 40.4
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 2.8e-08 62.4 72 44.4
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 2.8e-08 62.4 104 35.6
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 1.8e-07 59.7 96 34.4
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 4.1e-07 58.5 65 38.5
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 7.0e-07 57.8 57 45.6
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 9.2e-07 57.4 46 54.3
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 5.9e-06 54.7 130 38.5


User provided reference genes

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