Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 1.8e-139 499.2 244 100.0
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 7.0e-59 231.5 254 49.6
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 1.0e-57 227.6 270 47.0
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 1.9e-56 223.4 270 46.7
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 4.4e-53 212.2 229 52.8
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 1.3e-49 200.7 262 43.1
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 6.1e-47 191.8 217 46.5
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 1.0e-46 191.0 242 44.2
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 1.0e-46 191.0 245 42.9
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 1.4e-46 190.7 247 45.7
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 8.8e-46 188.0 206 46.6
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 1.5e-45 187.2 196 48.0
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 2.0e-45 186.8 249 42.2
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 2.6e-45 186.4 210 46.7
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 2.2e-44 183.3 234 41.9
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 2.2e-44 183.3 194 49.0
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 2.8e-44 183.0 220 45.5
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.8e-44 183.0 222 42.3
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 4.8e-44 182.2 219 45.2
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 4.8e-44 182.2 240 42.9
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.4e-43 180.6 194 49.0
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.4e-43 180.6 194 49.0
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 1.4e-43 180.6 240 41.2
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 1.4e-43 180.6 231 43.3
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 2.4e-43 179.9 262 40.5
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 4.1e-43 179.1 194 47.9
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 4.1e-43 179.1 203 43.8
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 9.1e-43 177.9 195 49.7
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 1.2e-42 177.6 222 44.1
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 1.2e-42 177.6 216 44.0
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 1.6e-42 177.2 195 49.7
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 1.6e-42 177.2 195 49.2
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 2.0e-42 176.8 199 44.2
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 2.7e-42 176.4 210 47.1
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 3.5e-42 176.0 228 42.1
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 3.5e-42 176.0 225 40.9
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 3.5e-42 176.0 222 41.9
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 5.9e-42 175.3 278 38.5
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 7.7e-42 174.9 254 39.8
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 7.7e-42 174.9 226 43.4
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 7.7e-42 174.9 199 43.7
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 7.7e-42 174.9 199 44.2
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 1.0e-41 174.5 226 42.0
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 1.3e-41 174.1 217 44.7
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 1.3e-41 174.1 201 44.3
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 1.7e-41 173.7 236 41.5
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 2.3e-41 173.3 241 41.5
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 2.3e-41 173.3 231 40.7
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 2.9e-41 172.9 199 44.2
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 3.8e-41 172.6 205 42.9
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 3.8e-41 172.6 222 40.1
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 3.8e-41 172.6 227 40.1
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 6.6e-41 171.8 198 44.4
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 8.6e-41 171.4 229 41.9
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 1.1e-40 171.0 218 44.0
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 1.1e-40 171.0 221 45.7
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 1.9e-40 170.2 272 40.8
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 1.9e-40 170.2 241 40.7
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 4.2e-40 169.1 211 45.5
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 4.2e-40 169.1 198 46.0
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 5.5e-40 168.7 224 41.5
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 7.2e-40 168.3 198 44.9
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 9.5e-40 167.9 211 44.5
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 9.5e-40 167.9 235 40.0
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 2.8e-39 166.4 238 39.5
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 2.8e-39 166.4 195 45.1
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 4.7e-39 165.6 241 39.4
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 6.1e-39 165.2 238 41.2
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 6.1e-39 165.2 213 42.7
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 6.1e-39 165.2 242 40.1
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 8.0e-39 164.9 211 42.2
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 1.4e-38 164.1 225 39.6
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 3.0e-38 162.9 243 39.5
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 3.0e-38 162.9 268 37.7
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 8.9e-38 161.4 218 39.0
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 2.0e-37 160.2 218 38.5
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 3.4e-37 159.5 134 55.2
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 8.3e-36 154.8 204 43.1
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 3.1e-35 152.9 227 39.2
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 3.1e-35 152.9 225 39.1
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 2.3e-33 146.7 214 41.6
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 1.5e-32 144.1 173 45.1
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 3.3e-32 142.9 204 37.3
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 3.6e-31 139.4 184 42.4
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 8.0e-31 138.3 199 37.2
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 1.2e-29 134.4 192 38.0
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 2.6e-29 133.3 200 36.5
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 9.8e-29 131.3 161 43.5
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 4.9e-28 129.0 90 67.8
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 4.1e-27 125.9 211 31.8
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 9.2e-27 124.8 209 36.8
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 1.2e-26 124.4 127 52.8
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 2.7e-26 123.2 118 55.9
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 3.5e-26 122.9 209 36.8
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 1.1e-24 117.9 104 58.7
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 1.1e-24 117.9 71 73.2
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 3.1e-22 109.8 205 32.2
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 3.1e-22 109.8 198 35.9
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 1.2e-21 107.8 167 37.7
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 5.4e-19 99.0 55 76.4
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 2.1e-18 97.1 80 58.8
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 1.7e-17 94.0 60 71.7
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 4.3e-16 89.4 68 52.9
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 9.5e-16 88.2 168 33.9
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 1.1e-14 84.7 73 49.3
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 1.5e-13 80.9 68 52.9
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 3.4e-13 79.7 66 50.0
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 1.2e-10 71.2 65 50.8
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 5.1e-09 65.9 60 43.3
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 6.6e-09 65.5 43 69.8
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 1.1e-08 64.7 44 56.8
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 2.1e-07 60.5 67 41.8


User provided reference genes

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