Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 3.4e-212 741.5 397 100.0
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 4.5e-108 395.6 406 59.9
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 7.5e-103 378.3 404 59.7
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.2e-92 344.4 368 56.5
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.1e-88 331.3 413 52.3
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.8e-88 330.5 401 50.9
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 4.0e-88 329.3 401 52.1
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 1.4e-85 320.9 366 54.9
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.9e-85 320.5 407 54.1
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 5.4e-85 318.9 398 50.8
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 1.6e-84 317.4 394 51.0
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.7e-83 313.9 406 50.5
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 8.6e-83 311.6 431 47.3
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 1.1e-82 311.2 409 49.1
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.1e-82 311.2 407 50.6
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 1.2e-81 307.8 364 52.7
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 1.8e-80 303.9 400 49.2
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 1.8e-80 303.9 433 46.4
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 3.1e-80 303.1 434 45.9
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 5.2e-80 302.4 359 52.4
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 6.8e-80 302.0 360 52.2
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 2.0e-79 300.4 413 49.6
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 5.8e-79 298.9 367 52.6
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.3e-78 297.7 408 48.0
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.3e-78 297.7 412 47.6
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 3.7e-78 296.2 407 48.2
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.1e-77 294.7 410 46.6
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 1.4e-77 294.3 403 48.4
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.9e-77 293.9 403 47.1
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 4.1e-77 292.7 402 48.5
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 1.2e-76 291.2 274 59.9
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 1.2e-76 291.2 400 48.0
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 2.7e-76 290.0 414 46.1
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 2.7e-76 290.0 418 47.6
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 4.6e-76 289.3 403 46.4
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 7.8e-76 288.5 395 46.8
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 5.1e-75 285.8 400 46.5
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 5.1e-75 285.8 401 44.9
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 8.6e-75 285.0 405 45.9
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 1.9e-74 283.9 391 47.1
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 5.6e-74 282.3 410 46.1
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.6e-73 280.8 399 46.4
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.6e-73 280.8 425 43.8
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 2.8e-73 280.0 277 54.2
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 6.2e-73 278.9 413 45.3
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 2.4e-72 276.9 403 44.2
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 3.1e-72 276.6 411 44.0
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 4.0e-72 276.2 362 49.4
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 2.0e-71 273.9 286 57.7
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 3.4e-71 273.1 415 44.1
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 4.4e-71 272.7 425 44.0
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 4.4e-71 272.7 390 47.4
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 5.8e-71 272.3 418 44.7
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 3.8e-70 269.6 367 45.0
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 3.8e-70 269.6 363 49.9
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 6.4e-70 268.9 418 45.5
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 1.4e-69 267.7 414 43.7
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 1.9e-69 267.3 424 42.9
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 3.2e-69 266.5 373 45.3
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 5.4e-69 265.8 385 46.5
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 7.1e-69 265.4 404 44.3
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 1.2e-68 264.6 233 60.9
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 2.7e-68 263.5 374 45.5
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 7.8e-68 261.9 347 49.6
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 1.0e-67 261.5 397 43.8
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 3.9e-67 259.6 260 55.8
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 8.7e-67 258.5 358 46.6
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 8.7e-67 258.5 453 41.7
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 1.1e-66 258.1 371 46.6
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 3.3e-66 256.5 449 42.1
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 2.8e-65 253.4 421 42.3
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 3.6e-65 253.1 311 50.8
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 3.6e-65 253.1 230 62.6
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 4.8e-65 252.7 367 45.8
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 6.2e-65 252.3 374 42.2
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.8e-64 250.8 388 44.8
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 1.5e-63 247.7 314 48.7
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 1.5e-63 247.7 434 41.5
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 2.0e-63 247.3 400 42.2
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 5.8e-63 245.7 394 44.4
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 2.9e-62 243.4 395 43.3
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.4e-61 241.1 358 44.4
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 1.9e-61 240.7 401 42.9
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 2.1e-60 237.3 374 43.3
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 3.3e-58 229.9 404 40.8
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 5.6e-58 229.2 416 39.2
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 2.8e-57 226.9 262 51.1
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.1e-56 224.9 342 44.4
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 1.1e-56 224.9 266 50.0
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 6.9e-56 222.2 370 42.2
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 6.9e-56 222.2 370 42.2
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 6.9e-56 222.2 370 42.2
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 9.0e-56 221.9 308 46.8
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 9.0e-56 221.9 269 50.2
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 3.4e-55 219.9 370 42.4
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 3.4e-55 219.9 199 61.8
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 4.5e-55 219.5 359 42.9
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.1e-53 214.9 197 60.4
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.2e-52 211.5 404 37.6
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.2e-52 211.5 423 38.8
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 1.6e-52 211.1 199 58.3
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.6e-52 211.1 411 35.3
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.7e-52 210.3 406 36.9
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 1.1e-50 204.9 287 51.6
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 2.5e-50 203.8 224 53.1
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 1.6e-49 201.1 400 37.0
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 3.7e-49 199.9 266 44.7
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 2.6e-47 193.7 322 41.9
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.2e-46 190.7 433 34.2
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 4.9e-46 189.5 410 38.5
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 1.4e-45 188.0 356 39.3
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 6.0e-44 182.6 203 53.2
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 6.0e-44 182.6 229 45.4
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 3.0e-43 180.3 392 36.0
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 3.3e-42 176.8 293 41.3
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 4.3e-42 176.4 390 36.9
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.3e-41 174.9 395 35.7
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 1.6e-41 174.5 435 35.9
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 3.7e-41 173.3 241 50.6
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 3.1e-40 170.2 357 38.1
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 8.4e-38 162.2 362 37.8
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 3.5e-36 156.8 279 40.9
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 2.3e-35 154.1 374 34.0
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.5e-34 151.4 289 40.1
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 1.3e-30 138.3 186 45.2
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 5.0e-30 136.3 213 37.1
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 7.2e-29 132.5 124 58.1
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 7.9e-28 129.0 198 40.4
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 3.3e-26 123.6 85 69.4
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 7.4e-26 122.5 251 42.2
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 7.4e-26 122.5 205 41.5
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 6.3e-25 119.4 122 54.1
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 6.3e-25 119.4 122 54.1
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 4.5e-23 113.2 204 40.2
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 2.9e-22 110.5 93 65.6
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 1.9e-21 107.8 90 62.2
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 2.1e-20 104.4 80 58.8
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 2.1e-20 104.4 201 38.8
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.8e-19 101.3 86 60.5
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 2.6e-18 97.4 114 51.8
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 3.3e-18 97.1 84 57.1
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 1.7e-14 84.7 383 29.2
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 2.7e-12 77.4 101 41.6
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 6.1e-12 76.3 65 60.0
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.4e-11 75.1 226 29.6
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 1.5e-10 71.6 210 29.5
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.6e-10 70.9 49 63.3
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 3.7e-09 67.0 81 46.9
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 6.3e-09 66.2 55 58.2
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 1.8e-08 64.7 170 32.4
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 1.3e-06 58.5 83 37.3


User provided reference genes

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