Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 9.6e-59 229.9 116 100.0
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.0e-44 181.8 116 80.2
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 7.4e-43 177.2 116 80.2
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.8e-41 172.6 116 79.3
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 4.1e-41 171.4 116 78.4
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 5.7e-35 151.0 112 72.3
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 7.4e-35 150.6 113 69.9
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 7.4e-35 150.6 114 66.7
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 1.3e-34 149.8 117 67.5
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 4.8e-34 147.9 113 69.0
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.8e-34 147.9 117 70.1
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 1.1e-33 146.7 112 68.8
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.8e-33 146.0 110 67.3
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 3.1e-33 145.2 110 68.2
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 3.1e-33 145.2 117 66.7
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 5.3e-33 144.4 110 69.1
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 5.3e-33 144.4 116 69.0
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 5.3e-33 144.4 112 69.6
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 7.0e-33 144.1 121 66.1
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 9.1e-33 143.7 110 68.2
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 9.1e-33 143.7 116 69.0
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.5e-32 142.9 114 65.8
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.5e-32 142.9 102 71.6
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.5e-32 142.9 102 71.6
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.5e-32 142.9 102 71.6
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.5e-32 142.9 116 68.1
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 2.0e-32 142.5 114 64.9
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.0e-32 142.5 115 67.8
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 2.0e-32 142.5 121 66.1
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.6e-32 142.1 112 67.0
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 3.5e-32 141.7 111 67.6
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 3.5e-32 141.7 112 65.2
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.5e-32 141.7 113 69.9
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 3.5e-32 141.7 116 67.2
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 4.5e-32 141.4 107 64.5
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 4.5e-32 141.4 113 69.9
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.5e-32 141.4 111 66.7
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.5e-32 141.4 113 65.5
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 5.9e-32 141.0 115 64.3
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 5.9e-32 141.0 114 66.7
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 7.7e-32 140.6 88 78.4
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 7.7e-32 140.6 101 72.3
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 7.7e-32 140.6 110 66.4
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 7.7e-32 140.6 114 66.7
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 7.7e-32 140.6 89 78.7
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 7.7e-32 140.6 116 64.7
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.0e-31 140.2 111 66.7
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.0e-31 140.2 109 67.9
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 1.3e-31 139.8 118 63.6
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.3e-31 139.8 109 69.7
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.3e-31 139.8 90 78.9
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 2.9e-31 138.7 114 67.5
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 2.9e-31 138.7 121 62.0
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.9e-31 138.7 111 68.5
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.9e-31 138.7 112 64.3
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 3.8e-31 138.3 85 77.6
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 5.0e-31 137.9 121 62.0
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 5.0e-31 137.9 112 65.2
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 8.5e-31 137.1 112 67.0
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 8.5e-31 137.1 98 72.4
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 8.5e-31 137.1 114 64.0
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 8.5e-31 137.1 110 64.5
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.5e-30 136.3 112 63.4
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.9e-30 136.0 90 80.0
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.9e-30 136.0 114 64.9
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.5e-30 135.6 114 63.2
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 2.5e-30 135.6 111 63.1
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 3.2e-30 135.2 114 62.3
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 4.2e-30 134.8 112 61.6
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 4.2e-30 134.8 110 62.7
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 5.5e-30 134.4 112 61.6
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 5.5e-30 134.4 112 61.6
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 7.2e-30 134.0 112 61.6
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 7.2e-30 134.0 88 73.9
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 9.4e-30 133.7 117 64.1
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 9.4e-30 133.7 109 65.1
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.2e-29 133.3 112 63.4
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.2e-29 133.3 93 72.0
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.6e-29 132.9 112 62.5
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.6e-29 132.9 93 72.0
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 1.6e-29 132.9 146 53.4
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.6e-29 132.9 116 62.1
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 2.7e-29 132.1 112 60.7
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 2.7e-29 132.1 118 61.0
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.7e-29 132.1 82 80.5
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 3.6e-29 131.7 91 68.1
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 4.7e-29 131.3 112 62.5
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 4.7e-29 131.3 113 62.8
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.0e-28 130.2 100 69.0
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.4e-28 129.8 115 60.9
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.3e-28 129.0 89 69.7
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 2.3e-28 129.0 111 63.1
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 3.0e-28 128.6 112 59.8
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 3.9e-28 128.3 114 62.3
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.9e-28 128.3 110 61.8
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 3.9e-28 128.3 90 72.2
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 5.2e-28 127.9 112 59.8
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 5.2e-28 127.9 90 72.2
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 6.7e-28 127.5 110 62.7
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 8.8e-28 127.1 110 60.9
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 8.8e-28 127.1 110 60.9
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 8.8e-28 127.1 110 60.9
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 8.8e-28 127.1 110 60.9
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.1e-27 126.7 87 70.1
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.1e-27 126.7 93 72.0
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.0e-27 125.9 87 69.0
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.0e-27 125.9 143 52.4
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 2.6e-27 125.6 93 71.0
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.3e-27 125.2 90 72.2
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 5.7e-27 124.4 117 59.0
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 5.7e-27 124.4 87 72.4
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 7.4e-27 124.0 85 69.4
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 7.4e-27 124.0 110 60.0
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 7.4e-27 124.0 89 68.5
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.3e-26 123.2 119 58.8
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 2.2e-26 122.5 114 57.9
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.8e-26 122.1 94 69.1
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 3.7e-26 121.7 157 49.7
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 6.3e-26 120.9 83 69.9
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 8.2e-26 120.6 112 57.1
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.1e-25 120.2 88 68.2
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 1.8e-25 119.4 105 61.9
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.4e-25 119.0 162 45.7
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 4.1e-25 118.2 89 66.3
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 4.1e-25 118.2 93 63.4
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 7.0e-25 117.5 87 66.7
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 9.1e-25 117.1 92 62.0
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 2.6e-24 115.5 114 56.1
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 7.7e-24 114.0 80 65.0
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.5e-22 109.8 99 57.6
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 6.1e-21 104.4 111 56.8
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 8.0e-21 104.0 88 62.5
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 8.0e-21 104.0 106 59.4
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 8.0e-21 104.0 87 66.7
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 3.0e-20 102.1 73 69.9
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.2e-19 100.1 109 56.9
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.7e-18 96.3 87 63.2
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.8e-18 94.7 83 63.9
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 8.3e-18 94.0 91 58.2
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 7.0e-17 90.9 85 57.6
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 5.9e-16 87.8 85 54.1
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 1.0e-15 87.0 75 61.3
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-15 86.7 78 57.7
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-15 86.7 78 57.7
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.9e-15 85.5 66 66.7
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 3.8e-15 85.1 66 66.7
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 3.8e-15 85.1 91 53.8
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 7.2e-14 80.9 91 48.4
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 2.1e-13 79.3 80 48.8
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 4.7e-13 78.2 52 75.0
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.0e-12 75.5 62 66.1
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 6.8e-12 74.3 51 76.5
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.4e-11 71.6 47 78.7
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.7e-10 69.7 51 78.4
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.4e-09 66.6 52 65.4
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.8e-09 66.2 64 53.1
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 3.5e-08 62.0 70 45.7
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 5.9e-08 61.2 79 48.1
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 1.7e-07 59.7 73 47.9
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 8.6e-07 57.4 66 50.0
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 8.6e-07 57.4 66 50.0
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.5e-06 56.6 63 47.6


User provided reference genes

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