Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 0.0e+00 2357.8 1361 100.0
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 1946.0 1243 87.6
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1942.9 1243 87.9
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 0.0e+00 1855.9 1243 79.2
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 0.0e+00 1854.3 1243 79.4
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 0.0e+00 1845.9 1243 78.2
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 0.0e+00 1840.9 1243 79.4
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 0.0e+00 1840.9 1243 79.0
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 0.0e+00 1837.8 1243 82.6
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 0.0e+00 1832.8 1272 76.3
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 0.0e+00 1830.5 1243 80.3
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 0.0e+00 1829.3 1243 78.3
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 0.0e+00 1828.1 1294 76.4
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 0.0e+00 1828.1 1242 77.5
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1827.4 1243 77.9
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 0.0e+00 1826.2 1241 77.4
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 0.0e+00 1823.5 1243 78.0
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 0.0e+00 1820.8 1243 79.0
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1818.9 1243 78.9
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1818.5 1243 77.3
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1818.5 1243 78.0
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1817.7 1243 77.3
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 0.0e+00 1817.4 1243 80.7
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 0.0e+00 1813.5 1243 78.3
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 1812.3 1243 77.5
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 0.0e+00 1808.5 1244 77.4
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 0.0e+00 1808.1 1244 79.3
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 0.0e+00 1807.7 1243 76.8
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 0.0e+00 1807.3 1243 79.3
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 0.0e+00 1807.0 1243 78.0
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 0.0e+00 1807.0 1243 79.2
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 1803.9 1243 77.2
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 1795.0 1243 76.5
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 0.0e+00 1792.7 1365 71.8
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 0.0e+00 1790.4 1243 75.7
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 1790.0 1243 79.0
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 1789.6 1243 77.3
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 1788.9 1272 78.9
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 1788.1 1250 77.1
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 0.0e+00 1786.9 1243 77.8
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 1785.0 1272 78.7
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 0.0e+00 1782.3 1241 80.3
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 0.0e+00 1775.8 1244 78.6
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 0.0e+00 1771.9 1256 75.0
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 0.0e+00 1768.8 1239 78.5
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 0.0e+00 1766.9 1271 74.6
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 1766.5 1243 75.2
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 0.0e+00 1765.4 1328 73.6
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 0.0e+00 1763.0 1241 75.7
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 0.0e+00 1761.5 1243 74.9
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 0.0e+00 1761.1 1243 75.9
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 0.0e+00 1756.5 1243 76.0
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1754.6 1243 77.1
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 0.0e+00 1752.6 1243 75.5
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 0.0e+00 1742.2 1243 80.1
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 0.0e+00 1741.1 1244 74.8
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 0.0e+00 1738.0 1338 70.6
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 0.0e+00 1734.9 1243 75.4
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 0.0e+00 1734.9 1243 76.3
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 0.0e+00 1730.3 1243 79.0
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 0.0e+00 1726.1 1243 73.2
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 0.0e+00 1724.1 1243 75.2
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 0.0e+00 1712.6 1243 74.4
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 0.0e+00 1702.6 1243 75.7
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 0.0e+00 1695.2 1243 75.5
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 0.0e+00 1694.9 1278 73.2
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 0.0e+00 1676.8 1243 76.5
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 0.0e+00 1667.9 1243 73.6
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 0.0e+00 1656.3 1243 75.2
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 0.0e+00 1656.0 1275 72.0
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 0.0e+00 1653.3 1091 80.5
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 0.0e+00 1652.5 1183 75.1
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 0.0e+00 1651.0 1243 75.1
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 0.0e+00 1649.8 1249 75.1
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 0.0e+00 1646.7 1097 80.0
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 0.0e+00 1644.8 1243 77.0
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 0.0e+00 1633.6 1244 76.2
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 0.0e+00 1633.2 1243 76.4
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 0.0e+00 1630.5 1244 74.3
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 0.0e+00 1630.2 1244 74.3
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 1629.8 1246 74.8
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 0.0e+00 1629.0 1244 74.2
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 0.0e+00 1629.0 1244 74.2
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 0.0e+00 1626.3 1243 69.3
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 0.0e+00 1625.9 1081 79.6
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 0.0e+00 1625.5 1244 74.1
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 0.0e+00 1622.4 1156 74.7
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 0.0e+00 1618.6 1243 76.3
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 0.0e+00 1614.0 1108 77.5
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 1613.6 1246 74.2
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 0.0e+00 1585.1 1244 68.8
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 0.0e+00 1550.4 1245 68.4
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 0.0e+00 1531.2 1207 73.2
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 0.0e+00 1519.6 1243 71.6
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 0.0e+00 1455.3 1244 64.5
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 0.0e+00 1443.7 1237 62.6
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 0.0e+00 1393.3 1249 63.2
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 0.0e+00 1345.1 1241 59.5
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 0.0e+00 1248.8 1186 61.0
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 0.0e+00 1150.2 797 76.9
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 0.0e+00 1117.4 1244 52.7
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 0.0e+00 1085.5 1088 60.1
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 3.0e-308 1062.4 867 73.0
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 1.3e-303 1047.0 662 82.5
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 1.6e-290 1003.4 720 80.0
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 5.2e-289 998.4 664 79.5
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 2.8e-282 976.1 1280 45.2
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 6.4e-271 938.3 1070 49.0
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 2.0e-248 863.6 765 62.9
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 8.8e-244 848.2 1245 41.2
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 6.3e-242 842.0 867 58.0
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.1e-238 831.2 620 71.9
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 2.8e-234 816.6 930 54.2
Zm00001eb208190 Zea mays HOM05D003193 ORTHO05D004924 8.0e-221 771.9 722 66.1
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 2.3e-207 727.2 656 61.9
CDE09G0101 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 3.1e-196 690.3 770 55.8
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 9.2e-177 625.5 448 73.0
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.5e-166 591.7 340 89.1
SEGI_35396 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.5e-163 581.6 348 83.6
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 1.3e-125 455.7 269 86.2
Nitab4.5_0018351g0010 Nicotiana tabacum HOM05D003193 ORTHO05D023334 2.0e-118 431.8 376 63.6
Zm00001eb208180 Zea mays HOM05D003193 ORTHO05D004924 2.6e-102 378.3 232 83.6
SEGI_04281 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 2.7e-99 368.2 335 60.6
SEGI_23671 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.5e-97 362.5 279 65.2
Psat2g117360 Pisum sativum HOM05D003193 ORTHO05D004924 3.5e-67 261.5 235 60.9
Nitab4.5_0019712g0010 Nicotiana tabacum HOM05D003193 ORTHO05D004924 2.8e-64 251.9 132 94.7
Psat2g117480 Pisum sativum HOM05D003193 ORTHO05D029199 2.1e-56 225.7 144 83.3
MCO13G622 Micromonas commoda HOM05D000681 ORTHO05D025872 2.2e-53 215.7 313 36.4
Lsat_1_v5_gn_8_52980 Lactuca sativa HOM05D003193 ORTHO05D004924 6.0e-51 207.6 195 60.0
Lsat_1_v5_gn_7_43461 Lactuca sativa HOM05D003193 ORTHO05D004924 9.6e-49 200.3 133 78.9
Lsat_1_v5_gn_2_9720 Lactuca sativa HOM05D003193 ORTHO05D004924 4.0e-47 194.9 134 77.6
Lsat_1_v5_gn_5_100381 Lactuca sativa HOM05D003193 ORTHO05D036451 2.9e-45 188.7 141 70.9
Lsat_1_v5_gn_2_111060 Lactuca sativa HOM05D003193 ORTHO05D000541 7.9e-43 180.6 126 77.8
Lsat_1_v5_gn_1_12580 Lactuca sativa HOM05D003193 ORTHO05D036451 8.1e-40 170.6 231 46.3
Actinidia26096 Actinidia chinensis HOM05D003193 ORTHO05D023334 3.1e-39 168.7 152 57.2
Actinidia06817 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.5e-38 166.4 120 75.8
Cre14.g615950 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 4.6e-35 154.8 291 34.4
Cre04.g222700 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 2.5e-33 149.1 291 29.6
PRCOL_00000464 Prasinoderma coloniale HOM05D000681 ORTHO05D025872 6.2e-32 144.4 299 32.8
Nitab4.5_0019712g0020 Nicotiana tabacum HOM05D003193 ORTHO05D004924 6.9e-31 141.0 79 89.9
Lsat_1_v5_gn_8_84401 Lactuca sativa HOM05D003193 ORTHO05D004924 1.5e-30 139.8 87 77.0
Lsat_1_v5_gn_3_136501 Lactuca sativa HOM05D003193 ORTHO05D004924 2.5e-28 132.5 84 77.4
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 5.1e-26 124.8 98 71.4
Ah.02g118650 Amaranthus hybridus HOM05D003193 ORTHO05D004924 1.8e-23 116.3 72 83.3
SEGI_09842 Sequoiadendron giganteum HOM05D003193 ORTHO05D036451 1.3e-21 110.2 83 62.7
PRCOL_00007280 Prasinoderma coloniale HOM05D000681 ORTHO05D028791 2.2e-21 109.4 262 27.5
DCAR_025592 Daucus carota HOM05D003193 ORTHO05D029199 2.9e-21 109.0 54 96.3
Lsat_1_v5_gn_5_158860 Lactuca sativa HOM05D003193 ORTHO05D231496 2.0e-17 96.3 65 73.8
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.7e-16 93.2 61 72.1
Lsat_1_v5_gn_8_87461 Lactuca sativa HOM05D003193 ORTHO05D000541 6.3e-16 91.3 55 83.6
Manes.08G142350 Manihot esculenta HOM05D003193 ORTHO05D023334 2.4e-15 89.4 93 50.5
DCAR_015795 Daucus carota HOM05D003193 ORTHO05D029199 1.0e-13 84.0 43 93.0
TWI60G1601 Tripterygium wilfordii HOM05D003193 ORTHO05D029199 8.5e-13 80.9 81 56.8
Actinidia23236 Actinidia chinensis HOM05D003193 ORTHO05D055714 3.2e-12 79.0 133 48.1
Actinidia26097 Actinidia chinensis HOM05D003193 ORTHO05D004924 9.7e-09 67.4 42 78.6
QL03p032673 Quercus lobata HOM05D003193 ORTHO05D337941 1.5e-06 60.1 31 90.3


User provided reference genes

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